RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 FGFR1P11362 822 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 CARSP49589 748 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 CDC16Q13042 620 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 MIER2Q8N344 545 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 ZNF669Q96BR6 464 aaPredicted RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 CBWD1Q9BRT8 395 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 UBE3AQ05086 875 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 HIST2H2ACQ16777 129 aaPredicted RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 HIST2H2AA3Q6FI13 130 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 RDM1Q8NG50 284 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 PDHA1P08559 390 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 VCLP18206 1134 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 FAM162AQ96A26 154 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 FAM129AQ9BZQ8 928 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 TRMT6Q9UJA5 497 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 FER1L4A9Z1Z3 1794 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 VGLL3A8MV65 326 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 HERC6Q8IVU3 1022 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 GMCL1P1Q8NEA9 526 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 CSGALNACT1Q8TDX6 532 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 PKD2L2Q9NZM6 624 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 EFCAB14O75071 495 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 HSPA9P38646 679 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 FSCN1Q16658 493 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 P2RX7Q99572 595 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 IRX2Q9BZI1 471 aaPredicted RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 AGO4Q9HCK5 861 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 NCOA3Q9Y6Q9 1424 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 DARSP14868 501 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 ACAT1P24752 427 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 VWA5AO00534 786 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 UGP2Q16851 508 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 TSGA10IPQ3SY00 556 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 SLFN11Q7Z7L1 901 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 WDR24Q96S15 920 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 CELF4Q9BZC1 486 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 THG1LQ9NWX6 298 aaKnown RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 RNF112Q9ULX5 631 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 PFDN1O60925 122 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 ENO3P13929 434 aaPredicted RBP11.8□□□□□ -0.52
TTC28-201ENST00000397906 OSBPL8Q9BZF1 889 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 PSD3Q9NYI0 1048 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 TFR2Q9UP52 801 aa11.8□□□□□ -0.52
TTC28-201ENST00000397906 TARSL2A2RTX5 802 aaKnown RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 A8MX80 341 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 ZNF189O75820 626 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 AKR1A1P14550 325 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 CYP11B2P19099 503 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 SLC16A1P53985 500 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 PTK6Q13882 451 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 KRT35Q92764 455 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 EMILIN2Q9BXX0 1053 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 PCNAP12004 261 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 TGM2P21980 687 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 RFX5P48382 616 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 AP2B1P63010 937 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 MAPRE2Q15555 327 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 CHMP1BQ7LBR1 199 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 MAGED4Q96JG8 741 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 KCNJ1P48048 391 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 NAPEPLDQ6IQ20 393 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 PALB2Q86YC2 1186 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 SPIRE2Q8WWL2 714 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 UBP1Q9NZI7 540 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 ALOX15P16050 662 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 ERVK-9P63128 1117 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 ERVK-24P63145 666 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 GUCY1A3Q02108 690 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 ZNF284Q2VY69 593 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 GALNTL6Q49A17 601 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 ACTR5Q9H9F9 607 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 PAK5Q9P286 719 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 PSMC3IPQ9P2W1 217 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 PLA2G4AP47712 749 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 VGLL4Q14135 290 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 TRAPPC11Q7Z392 1133 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 NT5MQ9NPB1 228 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 DSEQ9UL01 958 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 TCP11X1B4DZS4 312 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 CAMK2GQ13555 558 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 TRADDQ15628 312 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 EDRF1Q3B7T1 1238 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 SLC44A2Q8IWA5 706 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 APOL2Q9BQE5 337 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 TLR8Q9NR97 1041 aaKnown RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 TRIM16O95361 564 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 RBP3P10745 1247 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 MLNP12872 115 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 TTC39BQ5VTQ0 682 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 IFNLR1Q8IU57 520 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 PPP4CP60510 307 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 SFSWAPQ12872 951 aaKnown RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 LAYNQ6UX15 382 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 FAM131BQ86XD5 332 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 THAP2Q9H0W7 228 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 COPS7BQ9H9Q2 264 aaPredicted RBP11.79□□□□□ -0.52
TTC28-201ENST00000397906 ZNF556Q9HAH1 456 aa11.79□□□□□ -0.52
TTC28-201ENST00000397906 NKRFO15226 690 aaKnown RBP eCLIP11.79□□□□□ -0.52
TTC28-201ENST00000397906 GRB10Q13322 594 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms