RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 KSR1Q8IVT5 923 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 STKLD1Q8NE28 680 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 TRAPPC12Q8WVT3 735 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 CD101Q93033 1021 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 FIZ1Q96SL8 496 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 BTBD10Q9BSF8 475 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 OCEL1Q9H607 264 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 SYNCQ9H7C4 482 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 SEPT9Q9UHD8 586 aaPredicted RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 TCRBV7S2A1N4TA0A589 114 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 MYADML2A6NDP7 307 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 ZBTB42B2RXF5 422 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 RASA4BC9J798 803 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 NOP56O00567 594 aaKnown RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 GSC2O15499 205 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 PRPF4O43172 522 aaKnown RBP eCLIP11.7□□□□□ -0.543e-6■■□□□ 11.6
CUX1-204ENST00000393824 RASA4O43374 803 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 THAP12O43422 761 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 LYNP07948 512 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 STAT5BP51692 787 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 TNFAIP2Q03169 654 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 SFSWAPQ12872 951 aaKnown RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 SPARCL1Q14515 664 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 ZC2HC1CQ53FD0 456 aaPredicted RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 XKR9Q5GH70 373 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 CLNKQ7Z7G1 428 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 RDM1Q8NG50 284 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 CCDC77Q9BR77 488 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 GPR88Q9GZN0 384 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 SLCO1B3Q9NPD5 702 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 XPNPEP1Q9NQW7 623 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 DNAAF2Q9NVR5 837 aaKnown RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 TAS2R14Q9NYV8 317 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 NINJ2Q9NZG7 142 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 ZFP69BQ9UJL9 534 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 DYNC1LI2O43237 492 aaPredicted RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 TGFB1I1O43294 461 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 MAP3K7O43318 606 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 KRT36O76013 467 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 CHRNB2P17787 502 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 C1QTNF8P60827 252 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 BEX3Q00994 111 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 MYBPC2Q14324 1141 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 MTERF2Q49AM1 385 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 SYDE1Q6ZW31 735 aaPredicted RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 MIPOL1Q8TD10 442 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 SNF8Q96H20 258 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 CEP170P1Q96L14 293 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 AGPAT1Q99943 283 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 C16orf70Q9BSU1 422 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 KRT82Q9NSB4 513 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 SEL1LQ9UBV2 794 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 APEX2Q9UBZ4 518 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 TBK1Q9UHD2 729 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 GMEB1Q9Y692 573 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 ARHGEF35A5YM69 484 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 GCNT3O95395 438 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 LGALS2P05162 132 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 CYBAP13498 195 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 COMTP21964 271 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 CCND3P30281 292 aaPredicted RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 CACNB2Q08289 660 aaPredicted RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 WDR72Q3MJ13 1102 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 LIN52Q52LA3 116 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 STXBP4Q6ZWJ1 553 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 NLRP9Q7RTR0 991 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 TRABD2AQ86V40 505 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 REM2Q8IYK8 340 aaPredicted RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 BSNDQ8WZ55 320 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 ATP6V0A1Q93050 837 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 POP1Q99575 1024 aaKnown RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 KIFC3Q9BVG8 833 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 IQCGQ9H095 443 aaKnown RBP11.69□□□□□ -0.54
CUX1-204ENST00000393824 TMEM165Q9HC07 324 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 CYP26B1Q9NR63 512 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 DMAC2Q9NW81 257 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 GALNT8Q9NY28 637 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 IL1RAPL1Q9NZN1 696 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 PCDHB13Q9Y5F0 798 aa11.69□□□□□ -0.54
CUX1-204ENST00000393824 LGR5O75473 907 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 CYP1A1P04798 512 aaPredicted RBP11.68□□□□□ -0.54
CUX1-204ENST00000393824 MMP3P08254 477 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 NMT1P30419 496 aaKnown RBP11.68□□□□□ -0.54
CUX1-204ENST00000393824 GPC5P78333 572 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 KRT17Q04695 432 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 DAB2IPQ5VWQ8 1189 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 PALB2Q86YC2 1186 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 DNAJC5GQ8N7S2 189 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 PPTC7Q8NI37 304 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 TRAIPQ9BWF2 469 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 MIS12Q9H081 205 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 INTS2Q9H0H0 1204 aaKnown RBP11.68□□□□□ -0.54
CUX1-204ENST00000393824 SRRDQ9UH36 339 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 MYH9P35579 1960 aaKnown RBP11.68□□□□□ -0.54
CUX1-204ENST00000393824 A8MXQ7 604 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 FSCN2O14926 492 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 GJB1P08034 283 aa11.68□□□□□ -0.54
CUX1-204ENST00000393824 ABHD2P08910 425 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms