RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 FAM81AQ8TBF8 368 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ATXN2LQ8WWM7 1075 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ELAC2Q9BQ52 826 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 DNAAF2Q9NVR5 837 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 WDR35Q9P2L0 1181 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 DNPEPQ9ULA0 475 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 AKT3Q9Y243 479 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 BRCA1P38398 1863 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 EIF4E1BA6NMX2 242 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 DNALI1O14645 258 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 CNMDO75829 334 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 HOXC6P09630 235 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 STX2P32856 288 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 GJC2Q5T442 439 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TLDC1Q6P9B6 456 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TTC13Q8NBP0 860 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 HAUS1Q96CS2 278 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TRIM4Q9C037 500 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 ADAM7Q9H2U9 754 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TBK1Q9UHD2 729 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 TPX2Q9ULW0 747 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 DRG1Q9Y295 367 aaKnown RBP10.13□□□□□ -0.79
COL6A3-204ENST00000392003 NEU2Q9Y3R4 380 aa10.13□□□□□ -0.79
COL6A3-204ENST00000392003 IGKV6-21A0A0C4DH24 114 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 RNF8O76064 485 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 EEF1DP3Q658K8 133 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 DRICH1Q6PGQ1 229 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ARHGEF18Q6ZSZ5 1173 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ZCCHC9Q8N567 271 aaKnown RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 FZD8Q9H461 694 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ZWILCHQ9H900 591 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ERAP1Q9NZ08 941 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 POLIQ9UNA4 740 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 TNFSF13BQ9Y275 285 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 EXOC1LA0A1B0GW35 172 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 FAM189A1O60320 539 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 GH1P01241 217 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 CXCL8P10145 99 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 GJA8P48165 433 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 VCPP55072 806 aaKnown RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 LAMC2Q13753 1193 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 LRRC14Q15048 493 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ACBD5Q5T8D3 534 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 HIBCHQ6NVY1 386 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 DENND1BQ6P3S1 775 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 RIBC1Q8N443 379 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 USP33Q8TEY7 942 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 TFAP2BQ92481 460 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 PWWP2AQ96N64 755 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ZNF317Q96PQ6 595 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 CDT1Q9H211 546 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 CCDC134Q9H6E4 229 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 VPS37BQ9H9H4 285 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 hCG_1818297A0A087WSY0 165 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 BTBD19C9JJ37 291 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 TCEA3O75764 348 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 CDH5P33151 784 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 GCLCP48506 637 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 NR1H3Q13133 447 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ITIH4Q14624 930 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 TMED2Q15363 201 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 TNFAIP8L3Q5GJ75 292 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ZNF484Q5JVG2 852 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 LDLRAD1Q5T700 205 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 PPP1R21Q6ZMI0 780 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 CENPUQ71F23 418 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 POLNQ7Z5Q5 900 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 PCGF5Q86SE9 256 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 SRRM1Q8IYB3 904 aaKnown RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 NIPA2Q8N8Q9 360 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 RSAD2Q8WXG1 361 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ACSF2Q96CM8 615 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-204ENST00000392003 LHX5Q9H2C1 402 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 RRAGCQ9HB90 399 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 ITM2BQ9Y287 266 aa10.12□□□□□ -0.79
COL6A3-204ENST00000392003 CCT8L1PA6NM43 557 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 SIGLEC16A6NMB1 481 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 B4GALT5O43286 388 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 GJB1P08034 283 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 KLRC2P26717 231 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 GJA5P36382 358 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 RAP1GAPP47736 663 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 DYNLT1P63172 113 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 SF3A3Q12874 501 aaKnown RBP eCLIP10.11□□□□□ -0.79
COL6A3-204ENST00000392003 ACCSLQ4AC99 568 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 ALLCQ8N6M5 410 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 SHCBP1Q8NEM2 672 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 AFG1LQ8WV93 481 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 SLC5A4Q9NY91 659 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 UBAP1Q9NZ09 502 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 NAALADL1Q9UQQ1 740 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 LCTP09848 1927 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 TP73O15350 636 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 MAGEB2O15479 319 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 ABHD2P08910 425 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 TCF4P15884 667 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 GBP2P32456 591 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-204ENST00000392003 PTPN7P35236 360 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 ASPAP45381 313 aa10.11□□□□□ -0.79
COL6A3-204ENST00000392003 MORF4L2Q15014 288 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms