RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TMEM184AQ6ZMB5 413 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 HDXQ7Z353 690 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 DNAAF5Q86Y56 855 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 GLYCTKQ8IVS8 523 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 RIN2Q8WYP3 895 aaPredicted RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 TLE6Q9H808 572 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 CYP3A43Q9HB55 503 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 UBE2TQ9NPD8 197 aaPredicted RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 STXBP5LQ9Y2K9 1186 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 F8W810 466 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 FOXN3O00409 490 aaPredicted RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 MAP2K7O14733 419 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 TBC1D4O60343 1298 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 VNN1O95497 513 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 HLA-DRAP01903 254 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 IGFBP4P22692 258 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 PIK3CAP42336 1068 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 BRCC3P46736 316 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 MYL6P60660 151 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 ADGRE1Q14246 886 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 COL19A1Q14993 1142 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 PSMD5Q16401 504 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 DUSP6Q16828 381 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 VARS2Q5ST30 1063 aaKnown RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 TPGS2Q68CL5 300 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 OVOS1Q6IE37 1185 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 Q7L0L9 218 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 TAS1R1Q7RTX1 841 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 CEP57Q86XR8 500 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 ARHGEF19Q8IW93 802 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 LRRC57Q8N9N7 239 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 HASPINQ8TF76 798 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 ACBD6Q9BR61 282 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 HSFX1Q9UBD0 423 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 CACNG4Q9UBN1 327 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 L1RE1Q9UN81 338 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 SNX9Q9Y5X1 595 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 CITO14578 2027 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.81□□□□□ -0.68
VPS53-202ENST00000389040 RFXAPO00287 272 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 GABRDO14764 452 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 PPEF2O14830 753 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 TBXAS1P24557 533 aaPredicted RBP10.81□□□□□ -0.68
VPS53-202ENST00000389040 PCSK1P29120 753 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 TKTP29401 623 aaKnown RBP10.81□□□□□ -0.68
VPS53-202ENST00000389040 GALCP54803 685 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 RAB33AQ14088 237 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 MAPRE1Q15691 268 aaKnown RBP10.81□□□□□ -0.68
VPS53-202ENST00000389040 RTP2Q5QGT7 225 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 ENOSF1Q7L5Y1 443 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 TPCN2Q8NHX9 752 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 TAS1R2Q8TE23 839 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 C2orf15Q8WU43 125 aaKnown RBP10.81□□□□□ -0.68
VPS53-202ENST00000389040 MS4A14Q96JA4 679 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 FAM161BQ96MY7 647 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 UBXN6Q9BZV1 441 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 PLEKHA4Q9H4M7 779 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 SMARCAL1Q9NZC9 954 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 EHD2Q9NZN4 543 aa10.81□□□□□ -0.68
VPS53-202ENST00000389040 NCANO14594 1321 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 CES2O00748 559 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 CNPP09543 421 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 TMEM253P0C7T8 217 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 TNFAIP3P21580 790 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 WARSP23381 471 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 DNA2P51530 1060 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 YWHAEP62258 255 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 NOP14P78316 857 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 GABPB1Q06547 395 aaPredicted RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 RPS6KA1Q15418 735 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 SOWAHAQ2M3V2 549 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 MAP9Q49MG5 647 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 PLPP4Q5VZY2 271 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 UNC93AQ86WB7 457 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 EFHBQ8N7U6 833 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 ZNF461Q8TAF7 563 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 MYLIPQ8WY64 445 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 RUBCNQ92622 972 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 KLHL5Q96PQ7 755 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 AGPAT1Q99943 283 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 CLSTN3Q9BQT9 956 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 ST7Q9NRC1 585 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 PACSIN2Q9UNF0 486 aaPredicted RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 TDRD15B5MCY1 1934 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 HIDE1A8MVS5 230 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 TMCO5BA8MYB1 307 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 TEX28O15482 410 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 HOXB8P17481 243 aaPredicted RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 KLRC2P26717 231 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 IRS1P35568 1242 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 GCNT1Q02742 428 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 GPR17Q13304 367 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 NFE2Q16621 373 aaPredicted RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 CTXN3Q4LDR2 81 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 WSCD1Q658N2 575 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 SLFN11Q7Z7L1 901 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 DCP1BQ8IZD4 617 aaKnown RBP10.8□□□□□ -0.68
VPS53-202ENST00000389040 ADGRF2Q8IZF7 708 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 SYCE1Q8N0S2 351 aa10.8□□□□□ -0.68
VPS53-202ENST00000389040 CTNNBL1Q8WYA6 563 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms