RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TFDP3Q5H9I0 405 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 NAT8LQ8N9F0 302 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 DHRS4Q9BTZ2 278 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 XPNPEP1Q9NQW7 623 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 SNCAIPQ9Y6H5 919 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 CCDC195A0A1B0GUA6 201 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 KITP10721 976 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 RARBP10826 455 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 HARSP12081 509 aaKnown RBP19.34■□□□□ 0.69
CCDC3-201ENST00000378825 ETV4P43268 484 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 ROR2Q01974 943 aaKnown RBP19.34■□□□□ 0.69
CCDC3-201ENST00000378825 PRKD1Q15139 912 aaPredicted RBP19.34■□□□□ 0.69
CCDC3-201ENST00000378825 DRICH1Q6PGQ1 229 aaPredicted RBP19.34■□□□□ 0.69
CCDC3-201ENST00000378825 DCUN1D2Q6PH85 259 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 EGFL6Q8IUX8 553 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 PALM2Q8IXS6 379 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 TTLL6Q8N841 843 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 ATP11CQ8NB49 1132 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 SLC35B2Q8TB61 432 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 SYTL5Q8TDW5 730 aaPredicted RBP19.34■□□□□ 0.69
CCDC3-201ENST00000378825 STMN2Q93045 179 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 CYTH2Q99418 400 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 SYNCQ9H7C4 482 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 ETAA1Q9NY74 926 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 FEM1BQ9UK73 627 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 NFASCO94856 1347 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 B2RBV5 119 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 SKIP12755 728 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 MMP8P22894 467 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 IL1R2P27930 398 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 KDSRQ06136 332 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 RASA2Q15283 850 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 TAF5Q15542 800 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 KBTBD12Q3ZCT8 623 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 GATA6Q92908 595 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 OXNAD1Q96HP4 312 aaPredicted RBP19.34■□□□□ 0.69
CCDC3-201ENST00000378825 VPS11Q9H270 941 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 STX18Q9P2W9 335 aaKnown RBP19.34■□□□□ 0.69
CCDC3-201ENST00000378825 GABBR1Q9UBS5 961 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 SCINQ9Y6U3 715 aa19.34■□□□□ 0.69
CCDC3-201ENST00000378825 ABLIM1O14639 778 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 CST8O60676 142 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 MT-ND3P03897 115 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 ITGAVP06756 1048 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 SERPINB4P48594 390 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 TRAF1Q13077 416 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 PRPF39Q86UA1 669 aaKnown RBP19.33■□□□□ 0.69
CCDC3-201ENST00000378825 FAM160B2Q86V87 743 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 FAM71DQ8N9W8 422 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 ZNF398Q8TD17 642 aa19.33■□□□□ 0.69
CCDC3-201ENST00000378825 NKD2Q969F2 451 aaPredicted RBP19.33■□□□□ 0.69
CCDC3-201ENST00000378825 DRG1Q9Y295 367 aaKnown RBP19.33■□□□□ 0.69
CCDC3-201ENST00000378825 CYB561D2O14569 222 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 EGFRP00533 1210 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 RXRBP28702 533 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 BPIFB4P59827 614 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 RPS6P62753 249 aaKnown RBP19.33■□□□□ 0.68
CCDC3-201ENST00000378825 BASP1P80723 227 aaKnown RBP19.33■□□□□ 0.68
CCDC3-201ENST00000378825 AP1B1Q10567 949 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 PTK7Q13308 1070 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 SPDYAQ5MJ70 313 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 KIAA0319LQ8IZA0 1049 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 ARFGAP1Q8N6T3 406 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 RBM15BQ8NDT2 890 aaKnown RBP19.33■□□□□ 0.68
CCDC3-201ENST00000378825 VCXQ9H320 206 aa19.33■□□□□ 0.68
CCDC3-201ENST00000378825 C3orf70A6NLC5 250 aaPredicted RBP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 WNT10BO00744 389 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 EDN1P05305 212 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 ELK3P41970 407 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 GCLCP48506 637 aaPredicted RBP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 C1QBPQ07021 282 aaKnown RBP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 CEP128Q6ZU80 1094 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 PPIL6Q8IXY8 311 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 LRRN4Q8WUT4 740 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 TTC1Q99614 292 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 XPO7Q9UIA9 1087 aaKnown RBP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 SYNPO2Q9UMS6 1093 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 RPL26L1Q9UNX3 145 aaKnown RBP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 TOP3BO95985 862 aaKnown RBP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 PTGER2P43116 358 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 LIG4P49917 911 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 DNAJC24Q6P3W2 148 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 TRIM56Q9BRZ2 755 aaKnown RBP19.32■□□□□ 0.68
CCDC3-201ENST00000378825 PCMTD2Q9NV79 361 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 AGTPBP1Q9UPW5 1226 aa19.32■□□□□ 0.68
CCDC3-201ENST00000378825 TCRBV9S1A1TA0A576 114 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 KLHL33A6NCF5 533 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 ANKRD33BA6NCL7 494 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 DCAF8L1A6NGE4 600 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 WDR64B1ANS9 1081 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 TM9SF1O15321 606 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 ZC3H11AO75152 810 aaKnown RBP eCLIP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 CST3P01034 146 aaPredicted RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 ICAM1P05362 532 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 DHRS4L1P0CG22 281 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 DPEP1P16444 411 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 PGM5Q15124 567 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 CCDC62Q6P9F0 684 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 USP37Q86T82 979 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms