RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ODF2LQ9ULJ1 636 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 CTNND2Q9UQB3 1225 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 TRIM17Q9Y577 477 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 ARID2Q68CP9 1835 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 DNAH12Q6ZR08 3092 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 TRIM49BA6NDI0 452 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 HAS3O00219 553 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 IKBKBO14920 756 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 HBP1O60381 514 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 PRPF6O94906 941 aaKnown RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 F2P00734 622 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 MYL3P08590 195 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 JMJD7P0C870 316 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 PLS3P13797 630 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 ARL2P36404 184 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 MRE11P49959 708 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 SLC26A2P50443 739 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 NEK3P51956 506 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 PRMT2P55345 433 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 HSP90AA2PQ14568 343 aaPredicted RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 EMC2Q15006 297 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 DHCR24Q15392 516 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 ZC2HC1CQ53FD0 456 aaPredicted RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 TMEM201Q5SNT2 666 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 MARCH8Q5T0T0 291 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 ANKRD40Q6AI12 368 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 TTI2Q6NXR4 508 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 ZNF720Q7Z2F6 126 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 IRF2BP1Q8IU81 584 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 CBARPQ8N350 705 aaPredicted RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 GUF1Q8N442 669 aaKnown RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 GSTCDQ8NEC7 633 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 BAHD1Q8TBE0 780 aaPredicted RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 ASIC4Q96FT7 647 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 DHTKD1Q96HY7 919 aaPredicted RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 FAM167AQ96KS9 214 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 Q96M66 194 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 CCDC43Q96MW1 224 aaKnown RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 SLC6A18Q96N87 628 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 TIPINQ9BVW5 301 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 NAT10Q9H0A0 1025 aaKnown RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 ATP6V0A4Q9HBG4 840 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 PARVGQ9HBI0 331 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 OLFML3Q9NRN5 406 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 SAMSN1Q9NSI8 373 aaKnown RBP3.88□□□□□ -1.79
MCF2-202ENST00000370573 OBP2AQ9NY56 170 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 ERAP1Q9NZ08 941 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 IP6K2Q9UHH9 426 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 RWDD2AQ9UIY3 292 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 PTPN22Q9Y2R2 807 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 LOXHD1Q8IVV2 1947 aa3.88□□□□□ -1.79
MCF2-202ENST00000370573 SYNRGQ9UMZ2 1314 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SLC16A4O15374 487 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 C22orf31O95567 290 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 HSPA8P11142 646 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 ATP1A3P13637 1013 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 GLRA2P23416 452 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 CCNE1P24864 410 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 KLRC1P26715 233 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 NPTX2P47972 431 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 CPT1AP50416 773 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 POLGP54098 1239 aaPredicted RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 PURAQ00577 322 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 MYL5Q02045 173 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 FOXD4Q12950 439 aaPredicted RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 PAK1Q13153 545 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 ARHGEF6Q15052 776 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 ZCWPW2Q504Y3 356 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 ZNF484Q5JVG2 852 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 LCE3BQ5TA77 95 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SPATA1Q5VX52 437 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 CENPPQ6IPU0 288 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 OGFOD2Q6N063 350 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SPATS2Q86XZ4 545 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 NELFCDQ8IXH7 590 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 PHACTR4Q8IZ21 702 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 MYOCDQ8IZQ8 938 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 LRRC71Q8N4P6 559 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 LINC01465Q8N7H1 131 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 MCPH1Q8NEM0 835 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 KLHDC9Q8NEP7 349 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 DNAJB8Q8NHS0 232 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 PRPF31Q8WWY3 499 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 KIFAP3Q92845 792 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 P2RX5Q93086 422 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 NTPCRQ9BSD7 190 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 KIFC3Q9BVG8 833 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 POLR3FQ9H1D9 316 aaPredicted RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 KCTD10Q9H3F6 313 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 MRPL44Q9H9J2 332 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 SETD4Q9NVD3 440 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SEL1LQ9UBV2 794 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 DDX20Q9UHI6 824 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 ADAM30Q9UKF2 790 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 NFE2L3Q9Y4A8 694 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 MYH11P35749 1972 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 EVPLQ92817 2033 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 ADGRA3Q8IWK6 1321 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 CCDC169A6NNP5 214 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SMTNL1A8MU46 457 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms