RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MYLPFQ96A32 169 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 B3GALT6Q96L58 329 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 TMLHEQ9NVH6 421 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 SNX12Q9UMY4 172 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 ALG6Q9Y672 507 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 SF3B1O75533 1304 aaKnown RBP eCLIP19.64■□□□□ 0.743e-9■■■■■ 164.7
CLN3-206ENST00000360019 RANBP2P49792 3224 aaKnown RBP19.64■□□□□ 0.73
CLN3-206ENST00000360019 TMEM110-MUSTN1A8MSY1 372 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 SRGAP2O75044 1071 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 BEST1O76090 585 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 FGBP02675 491 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 SYN1P17600 705 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 VARS2Q5ST30 1063 aaKnown RBP19.64■□□□□ 0.73
CLN3-206ENST00000360019 PEX26Q7Z412 305 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 TMEM110Q86TL2 294 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 FAM35AQ86V20 835 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 LRRTM3Q86VH5 581 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 MED10Q9BTT4 135 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 DUSP16Q9BY84 665 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 SAR1BQ9Y6B6 198 aa19.64■□□□□ 0.73
CLN3-206ENST00000360019 ZBBXA8MT70 800 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 NPR3P17342 541 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 FGFR3P22607 806 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 PLA2G4AP47712 749 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 RPL34P49207 117 aaKnown RBP19.63■□□□□ 0.73
CLN3-206ENST00000360019 ALDH7A1P49419 539 aaKnown RBP19.63■□□□□ 0.73
CLN3-206ENST00000360019 ZNF268Q14587 947 aaPredicted RBP19.63■□□□□ 0.73
CLN3-206ENST00000360019 CLEC20AQ6ZU45 233 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 FEZF2Q8TBJ5 459 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 MCRS1Q96EZ8 462 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 MCEEQ96PE7 176 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 PSMB7Q99436 277 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.63■□□□□ 0.733e-6■□□□□ 10.1
CLN3-206ENST00000360019 KRT82Q9NSB4 513 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 WDR35Q9P2L0 1181 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 CDC23Q9UJX2 597 aa19.63■□□□□ 0.73
CLN3-206ENST00000360019 TMEM191CA6NGB0 347 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 GOLGA8SH3BPF8 625 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 XPO1O14980 1071 aaKnown RBP19.62■□□□□ 0.73
CLN3-206ENST00000360019 EFEMP2O95967 443 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 DNA2P51530 1060 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 CACNA2D1P54289 1103 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 TSPY1Q01534 308 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 MRPL58Q14197 206 aaKnown RBP19.62■□□□□ 0.73
CLN3-206ENST00000360019 TMEM240Q5SV17 173 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 FAM183BPQ6ZVS7 135 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 CEP57Q86XR8 500 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 PIWIL1Q96J94 861 aaKnown RBP19.62■□□□□ 0.73
CLN3-206ENST00000360019 TMEM30AQ9NV96 361 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 CXXC1Q9P0U4 656 aaPredicted RBP19.62■□□□□ 0.73
CLN3-206ENST00000360019 AMFRQ9UKV5 643 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 MYO1FO00160 1098 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 OR4Q2P0C623 313 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 FAM200BP0CF97 657 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 COMTP21964 271 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 CXCR5P32302 372 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 BTG3Q14201 252 aaPredicted RBP19.62■□□□□ 0.73
CLN3-206ENST00000360019 RPS6KA1Q15418 735 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 TAS1R1Q7RTX1 841 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 PIGZQ86VD9 579 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 CMTR2Q8IYT2 770 aaKnown RBP19.62■□□□□ 0.73
CLN3-206ENST00000360019 HES6Q96HZ4 224 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 OSBPL9Q96SU4 736 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 SELENOOQ9BVL4 669 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 RHOBTB2Q9BYZ6 727 aa19.62■□□□□ 0.73
CLN3-206ENST00000360019 MRPL42Q9Y6G3 142 aaKnown RBP19.62■□□□□ 0.73
CLN3-206ENST00000360019 SIGLEC16A6NMB1 481 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 ZNF185O15231 689 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 PAPSS1O43252 624 aaPredicted RBP19.61■□□□□ 0.73
CLN3-206ENST00000360019 AP1G2O75843 785 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 PRLRP16471 622 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 MAP3K7CLP57077 242 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 OGDHQ02218 1023 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 ZNF252P-AS1Q0IIN9 211 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 ELAVL2Q12926 359 aaKnown RBP19.61■□□□□ 0.73
CLN3-206ENST00000360019 RTP2Q5QGT7 225 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 DCUN1D2Q6PH85 259 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 KCNT2Q6UVM3 1135 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 ZMIZ2Q8NF64 920 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 JOSD2Q8TAC2 188 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 COG1Q8WTW3 980 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 IGSF21Q96ID5 467 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 HSFY1Q96LI6 401 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 YME1L1Q96TA2 773 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 SMOQ99835 787 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 VN1R3Q9BXE9 311 aa19.61■□□□□ 0.73
CLN3-206ENST00000360019 METTL5Q9NRN9 209 aaKnown RBP19.61■□□□□ 0.73
CLN3-206ENST00000360019 ZMYND8Q9ULU4 1186 aaPredicted RBP19.61■□□□□ 0.73
CLN3-206ENST00000360019 PROSCO94903 275 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 KRT3P12035 628 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 RFC1P35251 1148 aaPredicted RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 TAP1Q03518 808 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 OR6B2Q6IFH4 312 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 PSRC1Q6PGN9 363 aaPredicted RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 OLFML1Q6UWY5 402 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 CD101Q93033 1021 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 HTATIP2Q9BUP3 242 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 MIS12Q9H081 205 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 ZCWPW1Q9H0M4 648 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 CYLDQ9NQC7 956 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms