RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RBM10P98175 930 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 RNASELQ05823 741 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 CFAP221Q4G0U5 840 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RAB6CQ53S08 254 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 SMYD5Q6GMV2 418 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 DCUN1D2Q6PH85 259 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.37□□□□□ -1.71
MCF2-201ENST00000338585 FAM183BPQ6ZVS7 135 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 ZNF572Q7Z3I7 529 aaPredicted RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 ADAT2Q7Z6V5 191 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 TMCO2Q7Z6W1 182 aaPredicted RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 COLGALT2Q8IYK4 626 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 CRIPAKQ8N1N5 446 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 CLEC4CQ8WTT0 213 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 SLC35F5Q8WV83 523 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RSPH1Q8WYR4 309 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 ANKRD7Q92527 254 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 DDX27Q96GQ7 796 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 PBKQ96KB5 322 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RNPC3Q96LT9 517 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 TOX2Q96NM4 488 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TMEM209Q96SK2 561 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PNKPQ96T60 521 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 SYT15Q9BQS2 421 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 SELENOOQ9BVL4 669 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RHOBTB2Q9BYZ6 727 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 MIS12Q9H081 205 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RAB6CQ9H0N0 254 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PLEKHA4Q9H4M7 779 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 C11orf49Q9H6J7 331 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TMEM39AQ9NV64 488 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TMEM30AQ9NV96 361 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 KLHL11Q9NVR0 708 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 HESX1Q9UBX0 185 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TSC2P49815 1807 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TTC3P53804 2025 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TCRBV7S2A1N4TA0A589 114 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TRIM43BA6NCK2 446 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SIGLEC16A6NMB1 481 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 MIF4GDA9UHW6 222 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 M0QZQ0 153 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PAPSS1O43252 624 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 ZMYND10O75800 440 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 FGGP02679 453 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CXCL10P02778 98 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CLTBP09497 229 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 KRT3P12035 628 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CTNNA2P26232 953 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SSR1P43307 286 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 GABRB2P47870 512 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 STILQ15468 1287 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ATP13A4Q4VNC1 1196 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 FAM102AQ5T9C2 384 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 C1orf53Q5VUE5 145 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TXNRD3NBQ6F5E7 133 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 OR6B2Q6IFH4 312 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PPP1R2P3Q6NXS1 205 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 DCLRE1AQ6PJP8 1040 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ANKS1BQ7Z6G8 1248 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SCUBE3Q8IX30 993 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 KLHL7Q8IXQ5 586 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ZDHHC14Q8IZN3 488 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 RASGEF1CQ8N431 466 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ARFGAP1Q8N6T3 406 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ANKRD52Q8NB46 1076 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 OR10T2Q8NGX3 314 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 URGCPQ8TCY9 931 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ACTRT1Q8TDG2 376 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 IPO4Q8TEX9 1081 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 HDAC7Q8WUI4 952 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 NDRG1Q92597 394 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 TRIM43Q96BQ3 446 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 ACSF2Q96CM8 615 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 MCRS1Q96EZ8 462 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TNIP3Q96KP6 325 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 B3GALT6Q96L58 329 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CASD1Q96PB1 797 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 HERPUD2Q9BSE4 406 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SLC4A5Q9BY07 1137 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PARD6BQ9BYG5 372 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CARD9Q9H257 536 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 NRDE2Q9H7Z3 1164 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PRDM5Q9NQX1 630 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 TMLHEQ9NVH6 421 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 STRIP2Q9ULQ0 834 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PCDHB7Q9Y5E2 793 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PCDHA3Q9Y5H8 950 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CCDC66A2RUB6 948 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TBKBP1A7MCY6 615 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 NT5C1B-RDH14C9J2C7 533 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PI4K2BG5E9Z4 385 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PGRMC1O00264 195 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 CES2O00748 559 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 UPP2O95045 317 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 OR4Q2P0C623 313 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ODC1P11926 461 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 LCP1P13796 627 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CSF2RAP15509 400 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PSMA2P25787 234 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 FLT3P36888 993 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms