RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 RBM12Q9NTZ6 932 aaKnown RBP6.4□□□□□ -1.39
CSMD1-201ENST00000335551 PLEKHG2Q9H7P9 1386 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 ATXN2Q99700 1313 aaKnown RBP6.4□□□□□ -1.39
CSMD1-201ENST00000335551 PRLP01236 227 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 AKR1B1P15121 316 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 SOAT1P35610 550 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 CPA2P48052 419 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 VAMP7P51809 220 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 MIGA2Q7L4E1 593 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 HPS3Q969F9 1004 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 STK33Q9BYT3 514 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 KANSL2Q9H9L4 492 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 HAO1Q9UJM8 370 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 DBR1Q9UK59 544 aaKnown RBP6.4□□□□□ -1.39
CSMD1-201ENST00000335551 CHD4Q14839 1912 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 SOAT2O75908 522 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 AP3B2Q13367 1082 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 CCDC185Q8N715 623 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 FAM129BQ96TA1 746 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 LBHD1Q9BQE6 289 aaPredicted RBP6.4□□□□□ -1.39
CSMD1-201ENST00000335551 YEATS2Q9ULM3 1422 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 POTECB2RU33 542 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 ITGADQ13349 1161 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 SLC18A3Q16572 532 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 PPIL6Q8IXY8 311 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 LRRC17Q8N6Y2 441 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 SUN5Q8TC36 379 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 RFT1Q96AA3 541 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 FRMD8P1Q9BZ68 369 aaPredicted RBP6.4□□□□□ -1.39
CSMD1-201ENST00000335551 HEY2Q9UBP5 337 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 TRMT6Q9UJA5 497 aaKnown RBP6.4□□□□□ -1.39
CSMD1-201ENST00000335551 PHTF1Q9UMS5 762 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 PCDHGA3Q9Y5H0 932 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 RFX7Q2KHR2 1363 aa6.4□□□□□ -1.39
CSMD1-201ENST00000335551 CDHR2Q9BYE9 1310 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 TCOF1Q13428 1488 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 RAP1GAPP47736 663 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 USP10Q14694 798 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 UGT3A1Q6NUS8 523 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CASP12Q6UXS9 341 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 TMEM26Q6ZUK4 368 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 RAD54LQ92698 747 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 DNAJC7Q99615 494 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 SMAD5Q99717 465 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 ERP44Q9BS26 406 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 PABPC3Q9H361 631 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 MLH3Q9UHC1 1453 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CD3EAPO15446 510 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CACNB1Q02641 598 aaPredicted RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CHSY1Q86X52 802 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 SDR42E1Q8WUS8 393 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 GRIP2Q9C0E4 1043 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 NUAK2Q9H093 628 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 WDR35Q9P2L0 1181 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CORO1CQ9ULV4 474 aaPredicted RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 GDAQ9Y2T3 454 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 TBX22Q9Y458 520 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 PPP2R3BQ9Y5P8 575 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 GAS2O43903 313 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 ZNF682O95780 498 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 FASP25445 335 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CNTFP26441 200 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 AGAP9Q5VTM2 703 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 TMC4Q7Z404 712 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 EXOC3L1Q86VI1 746 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 MS4A14Q96JA4 679 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 GALNT8Q9NY28 637 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 PRELID1Q9Y255 219 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 HEATR9A2RTY3 570 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CHP2O43745 196 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 IL5RAQ01344 420 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 ILF2Q12905 390 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 TRAF2Q12933 501 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 MYBPC2Q14324 1141 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 KCNB1Q14721 858 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 SKIV2LQ15477 1246 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 KRT24Q2M2I5 525 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 KCTD21Q4G0X4 260 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 WDR93Q6P2C0 686 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 LRRC6Q86X45 466 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 ERO1BQ86YB8 467 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CLVS1Q8IUQ0 354 aaPredicted RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 OTUD5Q96G74 571 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 ZFYVE16Q7Z3T8 1539 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 BNIP3LO60238 219 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 HOXC9P31274 260 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 SPIRE1Q08AE8 756 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 TYSND1Q2T9J0 566 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 MARK2Q7KZI7 788 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 ATG16L2Q8NAA4 619 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 CABLES1Q8TDN4 633 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 BTG4Q9NY30 223 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 POLG2Q9UHN1 485 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 SFI1A8K8P3 1242 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 PPP2R1BP30154 601 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 TTC30BQ8N4P2 665 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 ARL10Q8N8L6 244 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 SLC35G2Q8TBE7 412 aa6.39□□□□□ -1.39
CSMD1-201ENST00000335551 POP5Q969H6 163 aaKnown RBP6.39□□□□□ -1.39
CSMD1-201ENST00000335551 C18orf25Q96B23 403 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms