RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZBTB7AO95365 584 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 CYP2D6P10635 497 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF157P51786 506 aaPredicted RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 TRAF2Q12933 501 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 RD3Q7Z3Z2 195 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 NANOGNBQ7Z5D8 188 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 NLNQ9BYT8 704 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 TUFT1Q9NNX1 390 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 FGRP09769 529 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 DSG1Q02413 1049 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 CYP24A1Q07973 514 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 PDK1Q15118 436 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 TTC23Q5W5X9 447 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 GLB1LQ6UWU2 654 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 RNF44Q7L0R7 432 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 DDHD1Q8NEL9 900 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 IPCEF1Q8WWN9 437 aaPredicted RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 AGPAT1Q99943 283 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 UBXN6Q9BZV1 441 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 NMT2O60551 498 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 MFN2O95140 757 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 KAT2BQ92831 832 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 FAM118BQ9BPY3 351 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 TRPC5OSA6NMA1 111 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 IL6STP40189 918 aaPredicted RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 DMPKQ09013 629 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 MTMR2Q13614 643 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 PDIA6Q15084 440 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 TMEM117Q9H0C3 514 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 HPS5Q9UPZ3 1129 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 PIGHQ14442 188 aaPredicted RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 KCNV1Q6PIU1 500 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 SYDE1Q6ZW31 735 aaPredicted RBP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 RBM15Q96T37 977 aaKnown RBP eCLIP11.8□□□□□ -0.52
PTPN4-201ENST00000263708 VPS9D1Q9Y2B5 631 aa11.8□□□□□ -0.52
PTPN4-201ENST00000263708 SPTLC1O15269 473 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 ENDOD1O94919 500 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 CD4P01730 458 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 CCNG1P51959 295 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 MROH9Q5TGP6 573 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 TFB1MQ8WVM0 346 aaKnown RBP11.79□□□□□ -0.52
PTPN4-201ENST00000263708 PUDPQ08623 228 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 PAN2Q504Q3 1202 aaKnown RBP11.79□□□□□ -0.52
PTPN4-201ENST00000263708 IQCF2Q8IXL9 164 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 GPRASP2Q96D09 838 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 TPD52L3Q96J77 140 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 SMARCAL1Q9NZC9 954 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 TDRKHQ9Y2W6 561 aaKnown RBP11.79□□□□□ -0.52
PTPN4-201ENST00000263708 ARAP3Q8WWN8 1544 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 PFASO15067 1338 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 CYP4A22Q5TCH4 519 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 TFE3P19532 575 aaPredicted RBP11.79□□□□□ -0.52
PTPN4-201ENST00000263708 MAPK1P28482 360 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 CDC73Q6P1J9 531 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 ZBTB1Q9Y2K1 713 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 NCOA4Q13772 614 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 RDM1Q8NG50 284 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 SLITRK2Q9H156 845 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 FBXO10Q9UK96 956 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 AMHR2Q16671 573 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 TRPM5Q9NZQ8 1165 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 GCC2Q8IWJ2 1684 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 UTP15Q8TED0 518 aaKnown RBP11.79□□□□□ -0.52
PTPN4-201ENST00000263708 MAP4K1Q92918 833 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 C6orf62Q9GZU0 229 aaPredicted RBP11.79□□□□□ -0.52
PTPN4-201ENST00000263708 GOLPH3Q9H4A6 298 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF862O60290 1169 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 CYP2E1P05181 493 aaPredicted RBP11.79□□□□□ -0.52
PTPN4-201ENST00000263708 STAT5BP51692 787 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 SYNE4Q8N205 404 aa11.79□□□□□ -0.52
PTPN4-201ENST00000263708 ECDO95905 644 aaPredicted RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PPP2R1BP30154 601 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 RFFLQ8WZ73 363 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 FAM20AQ96MK3 541 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 ELL3Q9HB65 397 aaPredicted RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 UTYO14607 1347 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 SCGNO76038 276 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 BMP10O95393 424 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 CPA2P48052 419 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 TAF1CQ15572 869 aaPredicted RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 DCP1BQ8IZD4 617 aaKnown RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 MRGBPQ9NV56 204 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PRKAG3Q9UGI9 489 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 STX7O15400 261 aaKnown RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 OR6A2O95222 327 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 CKBP12277 381 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 ARF4P18085 180 aaPredicted RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 GSSP48637 474 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PMF1Q6P1K2 205 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 ATG16L2Q8NAA4 619 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 SLC35G2Q8TBE7 412 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 CASP10Q92851 521 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 SGF29Q96ES7 293 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 VTI1BQ9UEU0 232 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 IFRD1O00458 451 aaPredicted RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 CNOT3O75175 753 aaKnown RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 WEE2P0C1S8 567 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PIK3R1P27986 724 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 DDR2Q16832 855 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 LINC00523Q86TU6 105 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms