RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CASKIN2Q8WXE0 1202 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 KLF6Q99612 283 aaPredicted RBP19.89■□□□□ 0.77
UPF1-201ENST00000262803 CNPY3Q9BT09 278 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 TMEM161AQ9NX61 479 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 TUBGCP4Q9UGJ1 667 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 GRAP2O75791 330 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 VDRP11473 427 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 ATICP31939 592 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 GEMIN4P57678 1058 aaKnown RBP19.89■□□□□ 0.77
UPF1-201ENST00000262803 FIGNQ5HY92 759 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 SPATA17Q96L03 361 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 EHD4Q9H223 541 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 VWA5AO00534 786 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 DYRK3O43781 588 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 FNTAP49354 379 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 NCALDP61601 193 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 TGFB2P61812 414 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 MTM1Q13496 603 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 TRIM48Q8IWZ4 208 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 AGBL1Q96MI9 1066 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 NAT9Q9BTE0 207 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 RUSC1Q9BVN2 902 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 PCMTD2Q9NV79 361 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 F5H5T6 163 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 WEE2P0C1S8 567 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 PON1P27169 355 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 PTGER2P43116 358 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 KCNK10P57789 538 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 SUGP1Q8IWZ8 645 aaKnown RBP19.89■□□□□ 0.77
UPF1-201ENST00000262803 TBX20Q9UMR3 447 aa19.89■□□□□ 0.77
UPF1-201ENST00000262803 STX7O15400 261 aaKnown RBP19.88■□□□□ 0.77
UPF1-201ENST00000262803 DEAF1O75398 565 aaPredicted RBP19.88■□□□□ 0.77
UPF1-201ENST00000262803 FAM83EQ2M2I3 478 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 KDELC2Q7Z4H8 507 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 TFB1MQ8WVM0 346 aaKnown RBP19.88■□□□□ 0.77
UPF1-201ENST00000262803 DPP3Q9NY33 737 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 CCT8L1PA6NM43 557 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 SERPIND1P05546 499 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 CAPZA2P47755 286 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 LACRTQ9GZZ8 138 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 ABCA9Q8IUA7 1624 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 TFRCP02786 760 aaKnown RBP19.88■□□□□ 0.77
UPF1-201ENST00000262803 PDGFRBP09619 1106 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 TCF7P36402 384 aaPredicted RBP19.88■□□□□ 0.77
UPF1-201ENST00000262803 PPP4R4Q6NUP7 873 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 APBB2Q92870 758 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 PPP1R36Q96LQ0 422 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 YIPF2Q9BWQ6 316 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 MYBPC2Q14324 1141 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 KIZQ2M2Z5 673 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 HERC6Q8IVU3 1022 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 ZSWIM1Q9BR11 485 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 TARS2Q9BW92 718 aaKnown RBP19.88■□□□□ 0.77
UPF1-201ENST00000262803 CCDC134Q9H6E4 229 aa19.88■□□□□ 0.77
UPF1-201ENST00000262803 MED24O75448 989 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 SMTNL2Q2TAL5 461 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 CDKAL1Q5VV42 579 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 RSPH10B2B2RC85 870 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 HMBSP08397 361 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 RSPH10BP0C881 870 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 LHX1P48742 406 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 MAPK7Q13164 816 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 DMC1Q14565 340 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 SEC23AQ15436 765 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 NTRK3Q16288 839 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 ITIH5Q86UX2 942 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 MDM1Q8TC05 714 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 OSCP1Q8WVF1 389 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 SYNDIG1Q9H7V2 258 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 CYP3A43Q9HB55 503 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 KANSL3Q9P2N6 904 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 DRG1Q9Y295 367 aaKnown RBP19.87■□□□□ 0.77
UPF1-201ENST00000262803 COPG1Q9Y678 874 aaKnown RBP19.87■□□□□ 0.77
UPF1-201ENST00000262803 USP32Q8NFA0 1604 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 FOXN3O00409 490 aaPredicted RBP19.87■□□□□ 0.77
UPF1-201ENST00000262803 PPP3CCP48454 512 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 DCAF6Q58WW2 860 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 APPL1Q9UKG1 709 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 SNTNA6NMZ2 147 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 ZW10O43264 779 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 RHOBTB1O94844 696 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 PRLRP16471 622 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 PAPD7Q5XG87 772 aaKnown RBP19.87■□□□□ 0.77
UPF1-201ENST00000262803 UBXN6Q9BZV1 441 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 L1RE1Q9UN81 338 aa19.87■□□□□ 0.77
UPF1-201ENST00000262803 NCAM1P13591 858 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 TGM3Q08188 693 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 CNTN1Q12860 1018 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 CUL2Q13617 745 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 C6orf10Q5SRN2 563 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 LVRNQ6Q4G3 990 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 HES6Q96HZ4 224 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 SEMA6BQ9H3T3 888 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 RRN3Q9NYV6 651 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 TRAF3IP3Q9Y228 551 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 MPZL3Q6UWV2 235 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 KIF2BQ8N4N8 673 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 GMCL1P1Q8NEA9 526 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 SLC20A1Q8WUM9 679 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 PABPC3Q9H361 631 aaKnown RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms