RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 DARS2Q6PI48 645 aaKnown RBP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 OTUD5Q96G74 571 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 ZNF395Q9H8N7 513 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 FBXO6Q9NRD1 293 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 EURLQ9NYK6 297 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 ZMYND8Q9ULU4 1186 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 H7C0C1 242 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 HOXC6P09630 235 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 ATP5OP48047 213 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 CDH6P55285 790 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 RTP1P59025 263 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 PPP6R3Q5H9R7 873 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 TEX2Q8IWB9 1127 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 CXCL16Q9H2A7 254 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 NGRNQ9NPE2 291 aaKnown RBP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 MARCOQ9UEW3 520 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-201ENST00000253024 LOXHD1Q8IVV2 1947 aa22.35■■□□□ 1.17
TRIM28-201ENST00000253024 TOP3BO95985 862 aaKnown RBP22.34■■□□□ 1.17
TRIM28-201ENST00000253024 KITP10721 976 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 ELK3P41970 407 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 TMEM62Q0P6H9 643 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 ZNF772Q68DY9 489 aaPredicted RBP22.34■■□□□ 1.17
TRIM28-201ENST00000253024 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.34■■□□□ 1.172e-8■■□□□ 12.1
TRIM28-201ENST00000253024 KLRG1Q96E93 195 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 FAM111AQ96PZ2 611 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 MECRQ9BV79 373 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 FAM49BQ9NUQ9 324 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 HOXC10Q9NYD6 342 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 WDR81Q562E7 1941 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 NFASCO94856 1347 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 E2F8A0AVK6 867 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 CFAP69A5D8W1 941 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 OGTO15294 1046 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 HCRTO43612 131 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 F7P08709 466 aaPredicted RBP22.34■■□□□ 1.17
TRIM28-201ENST00000253024 SLC8A1P32418 973 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 ZNF132P52740 706 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 BMPR2Q13873 1038 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 SGSM1Q2NKQ1 1148 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 ATF7IP2Q5U623 682 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 OR6B2Q6IFH4 312 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 TTC8Q8TAM2 541 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 ZNF75CPQ92670 426 aaPredicted RBP22.34■■□□□ 1.17
TRIM28-201ENST00000253024 RABGEF1Q9UJ41 708 aa22.34■■□□□ 1.17
TRIM28-201ENST00000253024 ENTPD5O75356 428 aa22.33■■□□□ 1.17
TRIM28-201ENST00000253024 TNNC2P02585 160 aa22.33■■□□□ 1.17
TRIM28-201ENST00000253024 VTNP04004 478 aa22.33■■□□□ 1.17
TRIM28-201ENST00000253024 KDELR1P24390 212 aa22.33■■□□□ 1.17
TRIM28-201ENST00000253024 PEBP4Q96S96 227 aa22.33■■□□□ 1.17
TRIM28-201ENST00000253024 SLC13A1Q9BZW2 595 aa22.33■■□□□ 1.17
TRIM28-201ENST00000253024 PSMC3IPQ9P2W1 217 aaPredicted RBP22.33■■□□□ 1.17
TRIM28-201ENST00000253024 LMNB2Q03252 620 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 ZC3H12AQ5D1E8 599 aaKnown RBP22.33■■□□□ 1.16
TRIM28-201ENST00000253024 ZNF667Q5HYK9 610 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 XRRA1Q6P2D8 792 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 WDR49Q8IV35 697 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 VCPIP1Q96JH7 1222 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 SPATA33Q96N06 139 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 MIS12Q9H081 205 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 XYLT2Q9H1B5 865 aa22.33■■□□□ 1.16
TRIM28-201ENST00000253024 GPR25O00155 361 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 FAM189A1O60320 539 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 GSCP56915 257 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 SLC25A11Q02978 314 aaKnown RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 VGLL4Q14135 290 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 PIGHQ14442 188 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 EFCAB12Q6NXP0 572 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 PRPF39Q86UA1 669 aaKnown RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ZBTB8OSQ8IWT0 167 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ARMCX1Q9P291 453 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 KBTBD13C9JR72 458 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 UGT1A9O60656 530 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 GEMIN4P57678 1058 aaKnown RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 MORF4L2Q15014 288 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 KBTBD12Q3ZCT8 623 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 WLSQ5T9L3 541 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 JADE1Q6IE81 842 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 LONP2Q86WA8 852 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 SEPT1Q8WYJ6 367 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ADPGKQ9BRR6 497 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 UGT1A7Q9HAW7 530 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 UGT1A10Q9HAW8 530 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 UGT1A8Q9HAW9 530 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 TCRBV5S1A1TA0A578 114 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 CFAP73A6NFT4 308 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 C3orf70A6NLC5 250 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ALOX15BO15296 676 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 UNC5CO95185 931 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ATXN1P54253 815 aaKnown RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ZNF280AP59817 542 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 PAXIP1Q6ZW49 1069 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-201ENST00000253024 PPM1NQ8N819 430 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 C1orf127Q8N9H9 656 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ANKRD36BP1Q96IX9 119 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 CLMNQ96JQ2 1002 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ELOVL4Q9GZR5 314 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 ELP3Q9H9T3 547 aa22.32■■□□□ 1.16
TRIM28-201ENST00000253024 LACTBL1A8MY62 500 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 FAAP100Q0VG06 881 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 BSPRYQ5W0U4 402 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms