RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TEPSINQ96N21 525 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 CYTH2Q99418 400 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 AP1M1Q9BXS5 423 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SRRDQ9UH36 339 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SLC25A13Q9UJS0 675 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SMG5Q9UPR3 1016 aaKnown RBP14.26□□□□□ -0.13
LDLR-201ENST00000252444 HEY1Q9Y5J3 304 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SOWAHBA6NEL2 793 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 HNRNPH3P31942 346 aaKnown RBP14.26□□□□□ -0.13
LDLR-201ENST00000252444 HIF1AQ16665 826 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 NLRP9Q7RTR0 991 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 CHSY1Q86X52 802 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 IL31RAQ8NI17 732 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 TFB1MQ8WVM0 346 aaKnown RBP14.26□□□□□ -0.13
LDLR-201ENST00000252444 SAGE1Q9NXZ1 904 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 NCANO14594 1321 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 RALBP11234 206 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 NCAM1P13591 858 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 COMTP21964 271 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SPARCL1Q14515 664 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 C3orf20Q8ND61 904 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 GRAMD1AQ96CP6 724 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 MMTAG2Q9BU76 263 aaKnown RBP14.26□□□□□ -0.13
LDLR-201ENST00000252444 ABCC13Q9NSE7 274 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SYN3O14994 580 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 RECQL4O94761 1208 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 MYCP01106 439 aaPredicted RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 CASP4P49662 377 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 GPS1Q13098 491 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 NAB1Q13506 487 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 TFDP3Q5H9I0 405 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 NUGGCQ68CJ6 796 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 ANO5Q75V66 913 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 MFN1Q8IWA4 741 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 PPIL6Q8IXY8 311 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 ADAM2Q99965 735 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 MAGED2Q9UNF1 606 aaPredicted RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 DRG1Q9Y295 367 aaKnown RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 M0R2N6 131 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 GSTA1P08263 222 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 HOXB8P17481 243 aaPredicted RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 MCOLN2Q8IZK6 566 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 GBP7Q8N8V2 638 aaPredicted RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 CFAP36Q96G28 342 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 IRS2Q9Y4H2 1338 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 CFAP99D6REC4 459 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 GHRP10912 638 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 PTK6Q13882 451 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 PAPD7Q5XG87 772 aaKnown RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 EFL1Q7Z2Z2 1120 aaKnown RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 IRGQQ8WZA9 623 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 ASIC4Q96FT7 647 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 DRC3Q9H069 523 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 POLD4Q9HCU8 107 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 WHRNQ9P202 907 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 TRHDEQ9UKU6 1024 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 POC1B-GALNT4F8VUJ3 575 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 TYMPP19971 482 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 CNTFP26441 200 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 CCR1P32246 355 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 HADHAP40939 763 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 E4F1Q66K89 784 aaPredicted RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 LHX5Q9H2C1 402 aa14.25□□□□□ -0.13
LDLR-201ENST00000252444 ABI2Q9NYB9 513 aaPredicted RBP14.25□□□□□ -0.13
LDLR-201ENST00000252444 A0A0B4J269 797 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 PQBP1O60828 265 aaKnown RBP14.24□□□□□ -0.13
LDLR-201ENST00000252444 TTC4O95801 387 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 MAPK8P45983 427 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 TUSC3Q13454 348 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 ZNF792Q3KQV3 632 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 USP41Q3LFD5 358 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 ZACNQ401N2 412 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 FAM49BQ9NUQ9 324 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 TBC1D13Q9NVG8 400 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 PRG3Q9Y2Y8 225 aaPredicted RBP14.24□□□□□ -0.13
LDLR-201ENST00000252444 APOA4P06727 396 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 CSH1P0DML2 217 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 CSH2P0DML3 217 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 CES1P23141 567 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 ARSEP51690 589 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 NBPF20Q3BBV1 942 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 RAD9BQ6WBX8 426 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 SLC13A5Q86YT5 568 aaPredicted RBP14.24□□□□□ -0.13
LDLR-201ENST00000252444 FIBCD1Q8N539 461 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 MCUR1Q96AQ8 359 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 FOPNLQ96NB1 174 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 TRPC7Q9HCX4 862 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 MRPL17Q9NRX2 175 aaKnown RBP14.24□□□□□ -0.13
LDLR-201ENST00000252444 A0A087X0B3 334 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 MAGEB16A2A368 324 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 SGPL1O95470 568 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 ASGR1P07306 291 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 YWHAQP27348 245 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 SLC6A3Q01959 620 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 UGT3A1Q6NUS8 523 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 SLC24A5Q71RS6 500 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 PID1Q7Z2X4 250 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 PHF13Q86YI8 300 aaPredicted RBP14.24□□□□□ -0.13
LDLR-201ENST00000252444 KSR1Q8IVT5 923 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 CHP1Q99653 195 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms