RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 ABCB6Q9NP58 842 aa14.93□□□□□ -0.02
LINC00339-211ENST00000641009 RBM12Q9NTZ6 932 aaKnown RBP14.93□□□□□ -0.02
LINC00339-211ENST00000641009 ZSCAN32Q9NX65 697 aa14.93□□□□□ -0.02
LINC00339-211ENST00000641009 FAM13BQ9NYF5 915 aa14.93□□□□□ -0.02
LINC00339-211ENST00000641009 CCL26Q9Y258 94 aa14.93□□□□□ -0.02
LINC00339-211ENST00000641009 UBE4BO95155 1302 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 MYBPHLA2RUH7 354 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 ATP2C2O75185 946 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 DLATP10515 647 aaKnown RBP14.92□□□□□ -0.02
LINC00339-211ENST00000641009 PDIA4P13667 645 aaKnown RBP14.92□□□□□ -0.02
LINC00339-211ENST00000641009 LMO2P25791 158 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 PCSK1P29120 753 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 CTHP32929 405 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 PSMC1P62191 440 aaKnown RBP14.92□□□□□ -0.02
LINC00339-211ENST00000641009 GAS6Q14393 721 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 TXNDC8Q6A555 127 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 SPATA2LQ8IUW3 424 aaPredicted RBP14.92□□□□□ -0.02
LINC00339-211ENST00000641009 KIAA2013Q8IYS2 634 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 CELF5Q8N6W0 485 aaKnown RBP14.92□□□□□ -0.02
LINC00339-211ENST00000641009 SPATA18Q8TC71 538 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 MSANTD3Q96H12 275 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 SLC39A2Q9NP94 309 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 CACNA1AO00555 2505 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 KIAA1549LQ6ZVL6 1849 aa14.92□□□□□ -0.02
LINC00339-211ENST00000641009 SPAG17Q6Q759 2223 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 TADA3O75528 432 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 CST3P01034 146 aaPredicted RBP14.91□□□□□ -0.02
LINC00339-211ENST00000641009 TDGF1P13385 188 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 TNNI1P19237 187 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 AVPR1AP37288 418 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 RPL10AP62906 217 aaKnown RBP14.91□□□□□ -0.02
LINC00339-211ENST00000641009 PON2Q15165 354 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 CFAP221Q4G0U5 840 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 FAM171BQ6P995 826 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 DPH6Q7L8W6 267 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 TRAPPC11Q7Z392 1133 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 LIMS2Q7Z4I7 341 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 RALGPS2Q86X27 583 aaPredicted RBP14.91□□□□□ -0.02
LINC00339-211ENST00000641009 RIN3Q8TB24 985 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 RUBCNQ92622 972 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 MRPS31Q92665 395 aaKnown RBP14.91□□□□□ -0.02
LINC00339-211ENST00000641009 USP13Q92995 863 aaPredicted RBP14.91□□□□□ -0.02
LINC00339-211ENST00000641009 CCDC127Q96BQ5 260 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 MMS19Q96T76 1030 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 SYT15Q9BQS2 421 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 GKN1Q9NS71 199 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 SERTAD1Q9UHV2 236 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 CFAP45Q9UL16 551 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 EML5Q05BV3 1969 aa14.91□□□□□ -0.02
LINC00339-211ENST00000641009 LILRB5O75023 590 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 NOL4O94818 638 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 PDGFRBP09619 1106 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 DDX6P26196 483 aaKnown RBP eCLIP14.9□□□□□ -0.02
LINC00339-211ENST00000641009 CCR3P51677 355 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 PLCB2Q00722 1185 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 SATB1Q01826 763 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 CYP24A1Q07973 514 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 PSMD6Q15008 389 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 TRIM68Q6AZZ1 485 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 ATL3Q6DD88 541 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 C1orf228Q6PIY5 440 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 MAMSTRQ6ZN01 415 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 Q6ZS52 159 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 HS2ST1Q7LGA3 356 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 SCN4BQ8IWT1 228 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 XXYLT1Q8NBI6 393 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 FNBP1Q96RU3 617 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 CGRRF1Q99675 332 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 IER2Q9BTL4 223 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 GZF1Q9H116 711 aaPredicted RBP14.9□□□□□ -0.02
LINC00339-211ENST00000641009 CRTAC1Q9NQ79 661 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 TDP1Q9NUW8 608 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 THG1LQ9NWX6 298 aaKnown RBP14.9□□□□□ -0.02
LINC00339-211ENST00000641009 UXTQ9UBK9 157 aaPredicted RBP14.9□□□□□ -0.02
LINC00339-211ENST00000641009 ZMYM5Q9UJ78 669 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 RCOR1Q9UKL0 485 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 MYOFQ9NZM1 2061 aa14.9□□□□□ -0.02
LINC00339-211ENST00000641009 PVALEFA0A1B0GWK0 134 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 WARSP23381 471 aaKnown RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 ID4P47928 161 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 LRRC32Q14392 662 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 BMT2Q1RMZ1 405 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 ITPRIPL2Q3MIP1 535 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 MON1AQ86VX9 555 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 CEP57L1Q8IYX8 460 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 MYLPFQ96A32 169 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 TRMT2BQ96GJ1 504 aaKnown RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 FUBP3Q96I24 572 aaKnown RBP eCLIP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 MYRFLQ96LU7 910 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 FAM83CQ9BQN1 747 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 MRPL45Q9BRJ2 306 aaKnown RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 FAM126AQ9BYI3 521 aaPredicted RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 EPC1Q9H2F5 836 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 EBF3Q9H4W6 596 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 TRPC7Q9HCX4 862 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 HPS4Q9NQG7 708 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 CDH9Q9ULB4 789 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 SMG5Q9UPR3 1016 aaKnown RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 NME7Q9Y5B8 376 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 LAMA1P25391 3075 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms