RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MBD3O95983 291 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 F11P03951 625 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 PDGFRBP09619 1106 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 CSH1P0DML2 217 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 CSH2P0DML3 217 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 HOXD11P31277 338 aaPredicted RBP20.56■□□□□ 0.88
CLN3-260ENST00000637578 TNNC1P63316 161 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 NCOA4Q13772 614 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 GRM2Q14416 872 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 DDR2Q16832 855 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 EDRF1Q3B7T1 1238 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 ARHGAP15Q53QZ3 475 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 C4orf50Q6ZRC1 276 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 ARID3BQ8IVW6 561 aaPredicted RBP20.56■□□□□ 0.88
CLN3-260ENST00000637578 MYCBPAPQ8TBZ2 947 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 TRMT2BQ96GJ1 504 aaKnown RBP20.56■□□□□ 0.88
CLN3-260ENST00000637578 MYRFLQ96LU7 910 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 IRF2BPLQ9H1B7 796 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 ZMYM5Q9UJ78 669 aa20.56■□□□□ 0.88
CLN3-260ENST00000637578 KANSL1LA0AUZ9 987 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 SHISA7A6NL88 538 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 SOBPA7XYQ1 873 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 HEPACAM2A8MVW5 462 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 STK25O00506 426 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 NOL4O94818 638 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 RPL13P26373 211 aaKnown RBP20.55■□□□□ 0.88
CLN3-260ENST00000637578 NLRP12P59046 1061 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 PSMC1P62191 440 aaKnown RBP20.55■□□□□ 0.88
CLN3-260ENST00000637578 FCHO2Q0JRZ9 810 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 BIRC3Q13489 604 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 TAF12Q16514 161 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 GPR158Q5T848 1215 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 SDHAF4Q5VUM1 108 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 VSTM1Q6UX27 236 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 SV2AQ7L0J3 742 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 CEP295NLQ96MC4 621 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 SNX25Q9H3E2 840 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 RMND1Q9NWS8 449 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 OBP2AQ9NY56 170 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 MAGEC2Q9UBF1 373 aaPredicted RBP20.55■□□□□ 0.88
CLN3-260ENST00000637578 NXF1Q9UBU9 619 aaKnown RBP20.55■□□□□ 0.88
CLN3-260ENST00000637578 SIT1Q9Y3P8 196 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 ARNTLO00327 626 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 VAMP7P51809 220 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 ADAM9Q13443 819 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 ZNF699Q32M78 642 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 INTS8Q75QN2 995 aaKnown RBP20.55■□□□□ 0.88
CLN3-260ENST00000637578 SMYD4Q8IYR2 804 aaPredicted RBP20.55■□□□□ 0.88
CLN3-260ENST00000637578 DTWD2Q8NBA8 298 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 PJA1Q8NG27 643 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 OR6B3Q8NGW1 331 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 IRF7Q92985 503 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 MYLPFQ96A32 169 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 PCED1BQ96HM7 432 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 LRRC3BQ96PB8 259 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 SLC46A2Q9BY10 475 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 OSBPL6Q9BZF3 934 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 NUP62CLQ9H1M0 184 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 BRD9Q9H8M2 597 aa20.55■□□□□ 0.88
CLN3-260ENST00000637578 SLC38A8A6NNN8 435 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 PTPN1P18031 435 aaKnown RBP20.54■□□□□ 0.88
CLN3-260ENST00000637578 PRCPP42785 496 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 CYP4F8P98187 520 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 SGSM1Q2NKQ1 1148 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 ZNF667Q5HYK9 610 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 ZNF658Q5TYW1 1059 aaPredicted RBP20.54■□□□□ 0.88
CLN3-260ENST00000637578 TAF4BQ92750 862 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 SPATA17Q96L03 361 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 FOXQ1Q9C009 403 aa20.54■□□□□ 0.88
CLN3-260ENST00000637578 GLULP15104 373 aa20.53■□□□□ 0.88
CLN3-260ENST00000637578 DDX6P26196 483 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLN3-260ENST00000637578 GDI1P31150 447 aa20.53■□□□□ 0.88
CLN3-260ENST00000637578 PSMC2P35998 433 aaKnown RBP20.53■□□□□ 0.88
CLN3-260ENST00000637578 STKLD1Q8NE28 680 aa20.53■□□□□ 0.88
CLN3-260ENST00000637578 GCNAQ96QF7 691 aa20.53■□□□□ 0.88
CLN3-260ENST00000637578 GTPBP4Q9BZE4 634 aaKnown RBP20.53■□□□□ 0.88
CLN3-260ENST00000637578 SMYD3Q9H7B4 428 aa20.53■□□□□ 0.88
CLN3-260ENST00000637578 HEBP1Q9NRV9 189 aa20.53■□□□□ 0.88
CLN3-260ENST00000637578 UXTQ9UBK9 157 aaPredicted RBP20.53■□□□□ 0.88
CLN3-260ENST00000637578 MAN1B1Q9UKM7 699 aa20.53■□□□□ 0.88
CLN3-260ENST00000637578 H0Y858 1186 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 PRAMEF12O95522 483 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 ASS1P00966 412 aaKnown RBP20.52■□□□□ 0.88
CLN3-260ENST00000637578 RFX1P22670 979 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 BDNFP23560 247 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 MLLT6P55198 1093 aaPredicted RBP20.52■□□□□ 0.88
CLN3-260ENST00000637578 FAM186BQ8IYM0 893 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 CMTM8Q8IZV2 173 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 NELL2Q99435 816 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 DPEP3Q9H4B8 488 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 MTF2Q9Y483 593 aaPredicted RBP20.52■□□□□ 0.88
CLN3-260ENST00000637578 COL4A3Q01955 1670 aa20.52■□□□□ 0.88
CLN3-260ENST00000637578 PIEZO1Q92508 2521 aa20.52■□□□□ 0.87
CLN3-260ENST00000637578 ZNF263O14978 683 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 CHADO15335 359 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 TADA3O75528 432 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 DCNP07585 359 aaKnown RBP20.51■□□□□ 0.87
CLN3-260ENST00000637578 CDH8P55286 799 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 PPP3CAQ08209 521 aa20.51■□□□□ 0.87
CLN3-260ENST00000637578 MDH1BQ5I0G3 518 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms