RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 RNF40O75150 1001 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 GCNT3O95395 438 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 EGFP01133 1207 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 USP17L7P0C7H9 530 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 ARSAP15289 507 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 CYP2F1P24903 491 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 PCSK1P29120 753 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 LHX1P48742 406 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 PXNP49023 591 aaPredicted RBP19.19■□□□□ 0.66
CIITA-215ENST00000637439 GPR15P49685 360 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 GALK1P51570 392 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 FAM160A1Q05DH4 1040 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 KCNA1Q09470 495 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 MTF1Q14872 753 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 DDR2Q16832 855 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 CFAP221Q4G0U5 840 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 USP49Q70CQ1 688 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 CSGALNACT2Q8N6G5 542 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 TOP6BLQ8N6T0 577 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 FSIP1Q8NA03 581 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 ATP2A3Q93084 1043 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 DNAJC19Q96DA6 116 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 CHFRQ96EP1 664 aa19.19■□□□□ 0.66
CIITA-215ENST00000637439 FUBP3Q96I24 572 aaKnown RBP eCLIP19.19■□□□□ 0.66
CIITA-215ENST00000637439 ZC3H10Q96K80 434 aaKnown RBP19.19■□□□□ 0.66
CIITA-215ENST00000637439 R3HCC1Q9Y3T6 440 aaKnown RBP19.19■□□□□ 0.66
CIITA-215ENST00000637439 SRPRBQ9Y5M8 271 aaKnown RBP19.19■□□□□ 0.66
CIITA-215ENST00000637439 TRAV19A0A0A6YYK7 116 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 MYMKA6NI61 221 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 PDCP20941 246 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 HOXC13P31276 330 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 GJA4P35212 333 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 RBP5P82980 135 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 KBTBD6Q86V97 674 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 SPATA2LQ8IUW3 424 aaPredicted RBP19.18■□□□□ 0.66
CIITA-215ENST00000637439 CCDC26Q8TAB7 109 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 OSCP1Q8WVF1 389 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 SAAL1Q96ER3 474 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 PKMYT1Q99640 499 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 ECT2Q9H8V3 914 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 DUS2Q9NX74 493 aaKnown RBP19.18■□□□□ 0.66
CIITA-215ENST00000637439 TBC1D7Q9P0N9 293 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 GTF3C4Q9UKN8 822 aa19.18■□□□□ 0.66
CIITA-215ENST00000637439 VPS37CA5D8V6 355 aaPredicted RBP19.17■□□□□ 0.66
CIITA-215ENST00000637439 KIAA0391O15091 583 aaKnown RBP19.17■□□□□ 0.66
CIITA-215ENST00000637439 CKMP06732 381 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 KRT19P08727 400 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 ACAT1P24752 427 aaKnown RBP19.17■□□□□ 0.66
CIITA-215ENST00000637439 IFNAR2P48551 515 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 PDE6CP51160 858 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 WNT7BP56706 349 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 NR1H3Q13133 447 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 SF3A2Q15428 464 aaKnown RBP19.17■□□□□ 0.66
CIITA-215ENST00000637439 SDHAF4Q5VUM1 108 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 CCDC73Q6ZRK6 1079 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 SYT13Q7L8C5 426 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 DPH6Q7L8W6 267 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 ADGRF2Q8IZF7 708 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 STKLD1Q8NE28 680 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 CD101Q93033 1021 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 ACDQ96AP0 544 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 FBRSL1Q9HCM7 1045 aaKnown RBP19.17■□□□□ 0.66
CIITA-215ENST00000637439 TRPC7Q9HCX4 862 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 FBXO2Q9UK22 296 aaPredicted RBP19.17■□□□□ 0.66
CIITA-215ENST00000637439 SNX9Q9Y5X1 595 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 CLIC4Q9Y696 253 aa19.17■□□□□ 0.66
CIITA-215ENST00000637439 GABRDO14764 452 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 TADA3O75528 432 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 TMEM191BP0C7N4 346 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 IDEP14735 1019 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 MAGEA11P43364 429 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 MYO1EQ12965 1108 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 USP4Q13107 963 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 ELF2Q15723 593 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 ZNF77Q15935 545 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 PLA2G2CQ5R387 149 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 C4orf50Q6ZRC1 276 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 RPLP0P6Q8NHW5 317 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 CXorf38Q8TB03 319 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 RIN3Q8TB24 985 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 CEP295NLQ96MC4 621 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 VPS45Q9NRW7 570 aa19.16■□□□□ 0.66
CIITA-215ENST00000637439 KRT37O76014 449 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 RHOBTB1O94844 696 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 APBB3O95704 486 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 KCNA4P22459 653 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 KCNB1Q14721 858 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 MAPRE1Q15691 268 aaKnown RBP19.15■□□□□ 0.66
CIITA-215ENST00000637439 ST3GAL2Q16842 350 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 PLK5Q496M5 336 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 SCN4BQ8IWT1 228 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 GPD1LQ8N335 351 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 ZSWIM2Q8NEG5 633 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 ANKRD36BP1Q96IX9 119 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 CHAMP1Q96JM3 812 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 HHIPQ96QV1 700 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 CYP2S1Q96SQ9 504 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 PDE11AQ9HCR9 933 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 EBF1Q9UH73 591 aa19.15■□□□□ 0.66
CIITA-215ENST00000637439 EML5Q05BV3 1969 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms