RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PCDHA3Q9Y5H8 950 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 TIMM13Q9Y5L4 95 aaPredicted RBP17.82■□□□□ 0.44
CLN3-252ENST00000636907 CCDC66A2RUB6 948 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 I3L4J1 428 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 PGRMC1O00264 195 aaKnown RBP17.81■□□□□ 0.44
CLN3-252ENST00000636907 B4GALT3O60512 393 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 ATP2C2O75185 946 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 B3GAT3O94766 335 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 SETSIPP0DME0 302 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 CCL23P55773 120 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 TAP1Q03518 808 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 ZNF211Q13398 564 aaPredicted RBP17.81■□□□□ 0.44
CLN3-252ENST00000636907 ZNF268Q14587 947 aaPredicted RBP17.81■□□□□ 0.44
CLN3-252ENST00000636907 NOMO2Q5JPE7 1267 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 KIAA0319Q5VV43 1072 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 DAB2IPQ5VWQ8 1189 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 TMEM86AQ8N2M4 240 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 MMGT1Q8N4V1 131 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 B3GALNT2Q8NCR0 500 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 IPO4Q8TEX9 1081 aaKnown RBP17.81■□□□□ 0.44
CLN3-252ENST00000636907 SLC35F5Q8WV83 523 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 APBB2Q92870 758 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 MCRS1Q96EZ8 462 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 TOX2Q96NM4 488 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 PPP1R12CQ9BZL4 782 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 RNF216Q9NWF9 866 aaPredicted RBP17.81■□□□□ 0.44
CLN3-252ENST00000636907 DDX43Q9NXZ2 648 aaKnown RBP17.81■□□□□ 0.44
CLN3-252ENST00000636907 IP6K2Q9UHH9 426 aa17.81■□□□□ 0.44
CLN3-252ENST00000636907 SCN5AQ14524 2016 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 SIGLEC16A6NMB1 481 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 E5RJQ4 531 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 PIK3R2O00459 728 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 DDHD2O94830 711 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 BRCC3P46736 316 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 RGS7P49802 495 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 OGDHQ02218 1023 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 PDE4CQ08493 712 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 ZNF252P-AS1Q0IIN9 211 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 CCDC142Q17RM4 750 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 PMF1Q6P1K2 205 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 ZNF280BQ86YH2 543 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 ANKRD52Q8NB46 1076 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.8■□□□□ 0.44
CLN3-252ENST00000636907 URGCPQ8TCY9 931 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 SLC2A14Q8TDB8 520 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 HASPINQ8TF76 798 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 RNPC3Q96LT9 517 aaKnown RBP17.8■□□□□ 0.44
CLN3-252ENST00000636907 ELAC1Q9H777 363 aaKnown RBP17.8■□□□□ 0.44
CLN3-252ENST00000636907 TTC7AQ9ULT0 858 aaPredicted RBP17.8■□□□□ 0.44
CLN3-252ENST00000636907 KRT3P12035 628 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 PTPN1P18031 435 aaKnown RBP17.8■□□□□ 0.44
CLN3-252ENST00000636907 TKTP29401 623 aaKnown RBP17.8■□□□□ 0.44
CLN3-252ENST00000636907 CYP2C18P33260 490 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 MAN1A1P33908 653 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 LHX1P48742 406 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 C1orf53Q5VUE5 145 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 AADACL2Q6P093 401 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 JOSD2Q8TAC2 188 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 SLC4A5Q9BY07 1137 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 METTL5Q9NRN9 209 aaKnown RBP17.8■□□□□ 0.44
CLN3-252ENST00000636907 TBC1D13Q9NVG8 400 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 TMEM59LQ9UK28 342 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 USTQ9Y2C2 406 aa17.8■□□□□ 0.44
CLN3-252ENST00000636907 F8W810 466 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 FGGP02679 453 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 CXCL10P02778 98 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 ITGB1P05556 798 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 ODC1P11926 461 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 RFC1P35251 1148 aaPredicted RBP17.79■□□□□ 0.44
CLN3-252ENST00000636907 GJA8P48165 433 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 LBX1P52954 281 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 BCAT1P54687 386 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 TAS2R40P59535 323 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 DSC1Q08554 894 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 BST2Q10589 180 aaKnown RBP17.79■□□□□ 0.44
CLN3-252ENST00000636907 DCLRE1AQ6PJP8 1040 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 FAM183BPQ6ZVS7 135 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 TET1Q8NFU7 2136 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 PARD6BQ9BYG5 372 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 MIS12Q9H081 205 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 CRTAC1Q9NQ79 661 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 ATP11BQ9Y2G3 1177 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 PCDHB7Q9Y5E2 793 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 TSC2P49815 1807 aa17.79■□□□□ 0.44
CLN3-252ENST00000636907 PYGMP11217 842 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 PAX3P23760 479 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 RWDD2BP57060 319 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 MDH1BQ5I0G3 518 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 FAM102AQ5T9C2 384 aaPredicted RBP17.78■□□□□ 0.44
CLN3-252ENST00000636907 OR6B2Q6IFH4 312 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 FBXO38Q6PIJ6 1188 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 COLGALT2Q8IYK4 626 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 FUKQ8N0W3 1084 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 STK32AQ8WU08 396 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 RSPH1Q8WYR4 309 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 PNKPQ96T60 521 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 HNRNPABQ99729 332 aaKnown RBP17.78■□□□□ 0.44
CLN3-252ENST00000636907 SYT15Q9BQS2 421 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 KANSL3Q9P2N6 904 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 LCMT1Q9UIC8 334 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms