RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 IFNB1P01574 187 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 KDELR1P24390 212 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 RPA3P35244 121 aaPredicted RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 ARL4CP56559 192 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 GEMIN4P57678 1058 aaKnown RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 TFAMQ00059 246 aaKnown RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 PLCB3Q01970 1234 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 HADHQ16836 314 aaKnown RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 FAM47EQ6ZV65 393 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 ATP11CQ8NB49 1132 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 RNF149Q8NC42 400 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 JOSD2Q8TAC2 188 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 BCO2Q9BYV7 579 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 KIF9Q9HAQ2 790 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 PHTF1Q9UMS5 762 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 PPP2R3BQ9Y5P8 575 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 GJA3Q9Y6H8 435 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 USH1CQ9Y6N9 552 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 ATP5HO75947 161 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 TNNC2P02585 160 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 KRT16P08779 473 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 SRGAP2CP0DJJ0 459 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 PHBP35232 272 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 LACTBP83111 547 aaPredicted RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 PDE4CQ08493 712 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 DNAJC3Q13217 504 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 HP1BP3Q5SSJ5 553 aaPredicted RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 ANKRD22Q5VYY1 191 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 SCARA5Q6ZMJ2 495 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 KIAA0319LQ8IZA0 1049 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 FBF1Q8TES7 1133 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 ANKRD36BP1Q96IX9 119 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 L3MBTL3Q96JM7 780 aaPredicted RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 PAIP2Q9BPZ3 127 aaKnown RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 WDR83Q9BRX9 315 aaKnown RBP13.41□□□□□ -0.26
LINC00540-203ENST00000631321 FZD8Q9H461 694 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 TXLNGQ9NUQ3 528 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 BTBD7Q9P203 1132 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 AGTPBP1Q9UPW5 1226 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 ACKR2O00590 384 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 CST8O60676 142 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 ITGBL1O95965 494 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-203ENST00000631321 RPL22P35268 128 aaKnown RBP13.4□□□□□ -0.26
LINC00540-203ENST00000631321 GDF10P55107 478 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 E2F5Q15329 346 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 SLC1A5Q15758 541 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 SPDYAQ5MJ70 313 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 TLDC1Q6P9B6 456 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 ADGRD1Q6QNK2 874 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 XYLT1Q86Y38 959 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 C4orf33Q8N1A6 199 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 CMASQ8NFW8 434 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-203ENST00000631321 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.4□□□□□ -0.26
LINC00540-203ENST00000631321 MAK16Q9BXY0 300 aaKnown RBP13.4□□□□□ -0.26
LINC00540-203ENST00000631321 ACSS3Q9H6R3 686 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 A0A1W2PPM1 405 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 GOLGA8SH3BPF8 625 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 ZWINTO95229 277 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 MSH2P43246 934 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 RAD23BP54727 409 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 PSMC1P62191 440 aaKnown RBP13.4□□□□□ -0.26
LINC00540-203ENST00000631321 MYO1EQ12965 1108 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 ACAP1Q15027 740 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 KLHL38Q2WGJ6 581 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 MSS51Q4VC12 460 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 FNBP1LQ5T0N5 605 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 PLPPR4Q7Z2D5 763 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 KIF2BQ8N4N8 673 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 AGAP11Q8TF27 550 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 PYROXD1Q8WU10 500 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 MZB1Q8WU39 189 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 SPOCK2Q92563 424 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 MYLK2Q9H1R3 596 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 ZWILCHQ9H900 591 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 CYLDQ9NQC7 956 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 TJP2Q9UDY2 1190 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 SIX4Q9UIU6 781 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 POLIQ9UNA4 740 aa13.4□□□□□ -0.26
LINC00540-203ENST00000631321 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-203ENST00000631321 IL18RAPO95256 599 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 CA4P22748 312 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 GABRB2P47870 512 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 GAD2Q05329 585 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 CBLBQ13191 982 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 SETDB1Q15047 1291 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 ATF7IP2Q5U623 682 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 ANKMY2Q8IV38 441 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 LRRC8CQ8TDW0 803 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 C10orf82Q8WW14 230 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 CPXM1Q96SM3 734 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 GPR20Q99678 358 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 LRMDAQ9H2I8 198 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 SLCO1B3Q9NPD5 702 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 SAE1Q9UBE0 346 aaPredicted RBP13.39□□□□□ -0.27
LINC00540-203ENST00000631321 CHKBQ9Y259 395 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 A0A0G2JMZ2 1700 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 APOC4-APOC2K7ER74 178 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 BANF1O75531 89 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 DCTN3O75935 186 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 WFS1O76024 890 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms