RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	SPTLC1	O15269	473 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	CILP	O75339	1184 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	NOMO3	P69849	1222 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	INCA1	Q0VD86	236 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	MYO1E	Q12965	1108 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	PAK2	Q13177	524 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	NAA30	Q147X3	362 aa	Predicted RBP	10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	TCEAL1	Q15170	157 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	IFI16	Q16666	785 aa	Known RBP	10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	MRPL10	Q7Z7H8	261 aa	Known RBP	10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	RTN4RL1	Q86UN2	441 aa	Predicted RBP	10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	RNF135	Q8IUD6	432 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	TPCN2	Q8NHX9	752 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	SLC35G2	Q8TBE7	412 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	LINC01599	Q8WXQ3	324 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	RFFL	Q8WZ73	363 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	TSC1	Q92574	1164 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	CYFIP2	Q96F07	1278 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	ELOVL4	Q9GZR5	314 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	MIOS	Q9NXC5	875 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	CACNG4	Q9UBN1	327 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	CHORDC1	Q9UHD1	332 aa	Predicted RBP	10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	LRFN2	Q9ULH4	789 aa		10.1	□□□□□ -0.79
PDLIM5-223	ENST00000627587	UQCRHL	A0A096LP55	91 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	SRGAP2	O75044	1071 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	ZNF623	O75123	536 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	UQCRH	P07919	91 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	BRD2	P25440	801 aa	Known RBP	10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	MLH1	P40692	756 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	NDUFV1	P49821	464 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	CENPC	Q03188	943 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	PTP4A2	Q12974	167 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	ORC1	Q13415	861 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	ACAD10	Q6JQN1	1059 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	PDE12	Q6L8Q7	609 aa	Known RBP	10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	LIMS2	Q7Z4I7	341 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	SLFN11	Q7Z7L1	901 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	CRIPAK	Q8N1N5	446 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	LRRC52	Q8N7C0	313 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	SLC4A11	Q8NBS3	891 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	PDCL3	Q9H2J4	239 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	ALG13	Q9NP73	1137 aa	Known RBP	10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	CDC23	Q9UJX2	597 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	JRKL	Q9Y4A0	524 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	PCDHB12	Q9Y5F1	795 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587	MUC6	Q6W4X9	2439 aa		10.09	□□□□□ -0.79
PDLIM5-223	ENST00000627587		A0A0U1RQF3	1178 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	THAP12	O43422	761 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	FTCD	O95954	541 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CYP1A2	P05177	515 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ITGA4	P13612	1032 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NOP2	P46087	812 aa	Known RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	RAB27A	P51159	221 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	HADHB	P55084	474 aa	Known RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TNNC1	P63316	161 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NHLH1	Q02575	133 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	DLX2	Q07687	328 aa	Predicted RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TUBB2A	Q13885	445 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	C2CD6	Q53TS8	623 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NAA35	Q5VZE5	725 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	LLGL2	Q6P1M3	1020 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MON1B	Q7L1V2	547 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ZNF598	Q86UK7	904 aa	Known RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PASD1	Q8IV76	773 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	WDTC1	Q8N5D0	677 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CPA5	Q8WXQ8	436 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MSLNL	Q96KJ4	702 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	GAD1	Q99259	594 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CDCA3	Q99618	268 aa	Predicted RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ADAM2	Q99965	735 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TUBB2B	Q9BVA1	445 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CYP3A43	Q9HB55	503 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ABCB6	Q9NP58	842 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PUF60	Q9UHX1	559 aa	Known RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PACSIN2	Q9UNF0	486 aa	Predicted RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PCDHB7	Q9Y5E2	793 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MRPL42	Q9Y6G3	142 aa	Known RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PIEZO1	Q92508	2521 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ARL5C	A6NH57	179 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ZNF185	O15231	689 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	BUB1B	O60566	1050 aa	Predicted RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MTA2	O94776	668 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SLU7	O95391	586 aa	Known RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ITGB1	P05556	798 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CYP3A5	P20815	502 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	LRPAP1	P30533	357 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CAMK1	Q14012	370 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CLUL1	Q15846	466 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SOWAHA	Q2M3V2	549 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MEI1	Q5TIA1	1274 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TRIM72	Q6ZMU5	477 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MCOLN2	Q8IZK6	566 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TTC39C	Q8N584	583 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	KLHL23	Q8NBE8	558 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	POF1B	Q8WVV4	589 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	KBTBD7	Q8WVZ9	684 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MMS19	Q96T76	1030 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MRPL45	Q9BRJ2	306 aa	Known RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CARD6	Q9BX69	1037 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	IRF2BPL	Q9H1B7	796 aa		10.08	□□□□□ -0.8

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