RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 ARSAP15289 507 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 GARTP22102 1010 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 TGM1P22735 817 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 ABCD1P33897 745 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 KPNA1P52294 538 aaPredicted RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 PSMC1P62191 440 aaKnown RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 PKP1Q13835 747 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 POSTNQ15063 836 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 STK38Q15208 465 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 INTS6LQ5JSJ4 861 aaKnown RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 TXNDC8Q6A555 127 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 EPM2AIP1Q7L775 607 aaPredicted RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 ITIH5Q86UX2 942 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 THEM5Q8N1Q8 247 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 MAB21L3Q8N8X9 362 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 SPPL2BQ8TCT7 592 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 CSGALNACT1Q8TDX6 532 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 KBTBD7Q8WVZ9 684 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 USP13Q92995 863 aaPredicted RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 DHX58Q96C10 678 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 ZNF560Q96MR9 790 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 SLC22A12Q96S37 553 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 GPR88Q9GZN0 384 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 GZF1Q9H116 711 aaPredicted RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 TASP1Q9H6P5 420 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 DDX43Q9NXZ2 648 aaKnown RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 HSFX1Q9UBD0 423 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 GTF3C4Q9UKN8 822 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 MAGED2Q9UNF1 606 aaPredicted RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 EXOC7Q9UPT5 735 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 PCDHB5Q9Y5E4 795 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 FRYQ5TBA9 3013 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 CHURC1-FNTBB4DL54 471 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 NCAM2O15394 837 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 TGFB1I1O43294 461 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 PRPF40AO75400 957 aaKnown RBP12.29□□□□□ -0.44
CPNE3-210ENST00000621245 KRT19P08727 400 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 PAX3P23760 479 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 FNTBP49356 437 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 TUFMP49411 452 aaKnown RBP12.29□□□□□ -0.44
CPNE3-210ENST00000621245 POU5F1Q01860 360 aaKnown RBP12.29□□□□□ -0.44
CPNE3-210ENST00000621245 VEPH1Q14D04 833 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 SOWAHAQ2M3V2 549 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 NT5DC4Q86YG4 428 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 GRAMD1CQ8IYS0 662 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 ADGRF2Q8IZF7 708 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 GPD1LQ8N335 351 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 CSGALNACT2Q8N6G5 542 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 BPIFB1Q8TDL5 484 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 ATRIPQ8WXE1 791 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 ELMO3Q96BJ8 720 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 CHAMP1Q96JM3 812 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 TRIM9Q9C026 710 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 KBTBD4Q9NVX7 518 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 HSPBP1Q9NZL4 362 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 NCDNQ9UBB6 729 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 ITGA11Q9UKX5 1188 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 SNX9Q9Y5X1 595 aa12.29□□□□□ -0.44
CPNE3-210ENST00000621245 ANTXRLA6NF34 631 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 GABRDO14764 452 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 SPTLC2O15270 562 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 NOL4O94818 638 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 LMO2P25791 158 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 CDC25CP30307 473 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 PRSS12P56730 875 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 TSPY1Q01534 308 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 CCINQ13939 588 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 RSPO4Q2I0M5 234 aaPredicted RBP12.28□□□□□ -0.44
CPNE3-210ENST00000621245 ARHGAP29Q52LW3 1261 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 ARHGAP15Q53QZ3 475 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 HEATR6Q6AI08 1181 aaKnown RBP12.28□□□□□ -0.44
CPNE3-210ENST00000621245 LIMS2Q7Z4I7 341 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 CCDC65Q8IXS2 484 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 DCP1BQ8IZD4 617 aaKnown RBP12.28□□□□□ -0.44
CPNE3-210ENST00000621245 CMTM8Q8IZV2 173 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 LRRC52Q8N7C0 313 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 C2orf15Q8WU43 125 aaKnown RBP12.28□□□□□ -0.44
CPNE3-210ENST00000621245 MYLPFQ96A32 169 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 E2F7Q96AV8 911 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 BLZF1Q9H2G9 400 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 TNMDQ9H2S6 317 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 ZSCAN16Q9H4T2 348 aaPredicted RBP12.28□□□□□ -0.44
CPNE3-210ENST00000621245 EBF3Q9H4W6 596 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 FBRSL1Q9HCM7 1045 aaKnown RBP12.28□□□□□ -0.44
CPNE3-210ENST00000621245 CRTAC1Q9NQ79 661 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 GKN1Q9NS71 199 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 TMEM30AQ9NV96 361 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 INTS13Q9NVM9 706 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 GDAP2Q9NXN4 497 aa12.28□□□□□ -0.44
CPNE3-210ENST00000621245 CLIC2O15247 247 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 HRO43593 1189 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 HUS1O60921 280 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 PPP6R2O75170 966 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 FGF19O95750 216 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 TMEM191BP0C7N4 346 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 WEE1P30291 646 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 PNPLA4P41247 253 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 CACNA2D1P54289 1103 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 USP46P62068 366 aa12.27□□□□□ -0.45
CPNE3-210ENST00000621245 ASIC1P78348 528 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms