RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 TSGA10Q9BZW7 698 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 HAUS4Q9H6D7 363 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 DZANK1Q9NVP4 752 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 DDX43Q9NXZ2 648 aaKnown RBP10.73□□□□□ -0.69
UPF1-213ENST00000601981 MYO1AQ9UBC5 1043 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 MAFFQ9ULX9 164 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 PCDHGC5Q9Y5F6 944 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 BRWD1Q9NSI6 2320 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 CDH23Q9H251 3354 aa10.73□□□□□ -0.69
UPF1-213ENST00000601981 PTPRDP23468 1912 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 A8MXQ7 604 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 F8VZ95 297 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 PER2O15055 1255 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 AKR1B10O60218 316 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 GFPT2O94808 682 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 PLEKP08567 350 aaPredicted RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 CCDC172P0C7W6 258 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 RPL17P18621 184 aaKnown RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 GNL1P36915 607 aaPredicted RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 CLCN4P51793 760 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 VAV2P52735 878 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 ROR1Q01973 937 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 KLHL30Q0D2K2 578 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 HYAL1Q12794 435 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 RAB33AQ14088 237 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 CCDC85BQ15834 202 aaPredicted RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 NFE2Q16621 373 aaPredicted RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 SPOPLQ6IQ16 392 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 SYT10Q6XYQ8 523 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 CCDC149Q6ZUS6 474 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 RTL10Q7L3V2 364 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 ENOSF1Q7L5Y1 443 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 LIMS2Q7Z4I7 341 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 IRF2BP2Q7Z5L9 587 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 KIAA1328Q86T90 577 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 UNC93AQ86WB7 457 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 PALB2Q86YC2 1186 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 PPM1KQ8N3J5 372 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 ZNF461Q8TAF7 563 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 C2orf15Q8WU43 125 aaKnown RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 SEMA4DQ92854 862 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 PABPC5Q96DU9 382 aaKnown RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 BCO2Q9BYV7 579 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 PLEKHA4Q9H4M7 779 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 SMYD3Q9H7B4 428 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 LUC7LQ9NQ29 371 aaKnown RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 CLDND1Q9NY35 253 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 DNAJC12Q9UKB3 198 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 AJAP1Q9UKB5 411 aaPredicted RBP10.72□□□□□ -0.69
UPF1-213ENST00000601981 CDH9Q9ULB4 789 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 POLIQ9UNA4 740 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 HCFC2Q9Y5Z7 792 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 ATP8B3O60423 1300 aa10.72□□□□□ -0.69
UPF1-213ENST00000601981 PRRG1O14668 218 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 GABRDO14764 452 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 ZNF263O14978 683 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 TGM5O43548 720 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 KRT86O43790 486 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 TBC1D4O60343 1298 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 SOX5P35711 763 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 ASPAP45381 313 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 MFAP3P55082 362 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 GNG11P61952 73 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 GCNT1Q02742 428 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 GPR17Q13304 367 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 CUL2Q13617 745 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 SLC39A12Q504Y0 691 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 INTS6LQ5JSJ4 861 aaKnown RBP10.71□□□□□ -0.69
UPF1-213ENST00000601981 SMYD5Q6GMV2 418 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 LLGL2Q6P1M3 1020 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 GJB7Q6PEY0 223 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 C4orf50Q6ZRC1 276 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 MYRIPQ8NFW9 859 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 SPPL2BQ8TCT7 592 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 KBTBD7Q8WVZ9 684 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 ZNF592Q92610 1267 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 JAKMIP2Q96AA8 810 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 SYT15Q9BQS2 421 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 ZCWPW1Q9H0M4 648 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 SFXN1Q9H9B4 322 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 APOBEC3GQ9HC16 384 aaKnown RBP10.71□□□□□ -0.69
UPF1-213ENST00000601981 LZTFL1Q9NQ48 299 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.71□□□□□ -0.692e-7■■■■□ 22
UPF1-213ENST00000601981 AFF4Q9UHB7 1163 aaKnown RBP10.71□□□□□ -0.69
UPF1-213ENST00000601981 DNAI1Q9UI46 699 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 BARX2Q9UMQ3 279 aaPredicted RBP10.71□□□□□ -0.69
UPF1-213ENST00000601981 COG5Q9UP83 839 aa10.71□□□□□ -0.69
UPF1-213ENST00000601981 A0A0U1RQJ8 604 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 WDR27A2RRH5 827 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 PJA2O43164 708 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 PDGFRBP09619 1106 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 WEE2P0C1S8 567 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 ATF2P15336 505 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 HOXB8P17481 243 aaPredicted RBP10.7□□□□□ -0.7
UPF1-213ENST00000601981 CD58P19256 250 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 CASQ1P31415 396 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 RAP1GAPP47736 663 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 INCA1Q0VD86 236 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 KIF5AQ12840 1032 aa10.7□□□□□ -0.7
UPF1-213ENST00000601981 PLD1Q13393 1074 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms