RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	MON1A	Q86VX9	555 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	GPR161	Q8N6U8	529 aa	Known RBP	18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LINC00301	Q8NCQ3	95 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CYP2S1	Q96SQ9	504 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	MMS19	Q96T76	1030 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PARD6A	Q9NPB6	346 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	HPS4	Q9NQG7	708 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	INTS13	Q9NVM9	706 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CDV3	Q9UKY7	258 aa	Known RBP	18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DENND4C	Q5VZ89	1909 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SDK1	Q7Z5N4	2213 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PTPRJ	Q12913	1337 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CLSTN1	O94985	981 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DDX6	P26196	483 aa	Known RBP eCLIP	18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PCSK1	P29120	753 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	WEE1	P30291	646 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LHX1	P48742	406 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	NASP	P49321	788 aa	Predicted RBP	18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CYP2J2	P51589	502 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SOWAHA	Q2M3V2	549 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LAIR1	Q6GTX8	287 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	NELFCD	Q8IXH7	590 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TOP6BL	Q8N6T0	577 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LRRC27	Q9C0I9	530 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	GDAP2	Q9NXN4	497 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	HSPBP1	Q9NZL4	362 aa		18.85	■□□□□ 0.61
SHKBP1-223	ENST00000600552	RALGAPA1	Q6GYQ0	2036 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552		K7ESF4	209 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CLIC2	O15247	247 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CKM	P06732	381 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DLAT	P10515	647 aa	Known RBP	18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LMO2	P25791	158 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CASP1	P29466	404 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CYP27A1	Q02318	531 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LMNB2	Q03252	620 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	GRSF1	Q12849	480 aa	Known RBP eCLIP	18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DUOXA2	Q1HG44	320 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PKN3	Q6P5Z2	889 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LONP2	Q86WA8	852 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CXorf38	Q8TB03	319 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CCDC127	Q96BQ5	260 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	FAM83C	Q9BQN1	747 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SYT15	Q9BQS2	421 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TNMD	Q9H2S6	317 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	POLR3B	Q9NW08	1133 aa	Predicted RBP	18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DLL3	Q9NYJ7	618 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	MAGEC2	Q9UBF1	373 aa	Predicted RBP	18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	UXT	Q9UBK9	157 aa	Predicted RBP	18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ZMYM5	Q9UJ78	669 aa		18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	18.84	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DCHS1	Q96JQ0	3298 aa		18.83	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TRAV19	A0A0A6YYK7	116 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	DCDC2B	A2VCK2	349 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	OTOL1	A6NHN0	477 aa	Predicted RBP	18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	NOL4	O94818	638 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TNNI1	P19237	187 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	HOXD13	P35453	343 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	GRIK1	P39086	918 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ATXN1	P54253	815 aa	Known RBP	18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	AMPD3	Q01432	767 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CCIN	Q13939	588 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SURF1	Q15526	300 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FSTL4	Q6MZW2	842 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ARL14EP	Q8N8R7	260 aa	Predicted RBP	18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	RIN3	Q8TB24	985 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	LEO1	Q8WVC0	666 aa	Predicted RBP	18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MYLPF	Q96A32	169 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SLC22A12	Q96S37	553 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	PKMYT1	Q99640	499 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	BACH2	Q9BYV9	841 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TRIM9	Q9C026	710 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	BLZF1	Q9H2G9	400 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ABCB6	Q9NP58	842 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	DUS2	Q9NX74	493 aa	Known RBP	18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SLC8A2	Q9UPR5	921 aa		18.83	■□□□□ 0.6
SHKBP1-223	ENST00000600552	OBSL1	O75147	1896 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	PRR5-ARHGAP8	B1AHC4	643 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	KIAA0391	O15091	583 aa	Known RBP	18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TADA3	O75528	432 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ABL1	P00519	1130 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	EGF	P01133	1207 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	HSP90AA1	P07900	732 aa	Known RBP	18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	USP17L7	P0C7H9	530 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	KCNA4	P22459	653 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	BDNF	P23560	247 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	IFNAR2	P48551	515 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	GALK1	P51570	392 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ARHGAP8	P85298	464 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	PSMD2	Q13200	908 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	E2F4	Q16254	413 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FAM26F	Q5R3K3	315 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	NAIF1	Q69YI7	327 aa	Predicted RBP	18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	C4orf50	Q6ZRC1	276 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	HS2ST1	Q7LGA3	356 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	IQUB	Q8NA54	791 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SPRYD3	Q8NCJ5	442 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CHFR	Q96EP1	664 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FNBP1	Q96RU3	617 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SNX25	Q9H3E2	840 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	KIF9	Q9HAQ2	790 aa		18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms