RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 ECM1Q16610 540 aa16.76■□□□□ 0.27
LIG1-214ENST00000597146 PEAR1Q5VY43 1037 aaPredicted RBP16.76■□□□□ 0.27
LIG1-214ENST00000597146 CCNI2Q6ZMN8 369 aaPredicted RBP16.76■□□□□ 0.27
LIG1-214ENST00000597146 DIS3L2Q8IYB7 885 aaKnown RBP16.76■□□□□ 0.27
LIG1-214ENST00000597146 OSCP1Q8WVF1 389 aa16.76■□□□□ 0.27
LIG1-214ENST00000597146 SPACA7Q96KW9 195 aa16.76■□□□□ 0.27
LIG1-214ENST00000597146 TMEM134Q9H6X4 195 aa16.76■□□□□ 0.27
LIG1-214ENST00000597146 ZMYM5Q9UJ78 669 aa16.76■□□□□ 0.27
LIG1-214ENST00000597146 MYO18AQ92614 2054 aaKnown RBP16.76■□□□□ 0.27
LIG1-214ENST00000597146 MYOFQ9NZM1 2061 aa16.76■□□□□ 0.27
LIG1-214ENST00000597146 BTBD18B2RXH4 712 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 TADA3O75528 432 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 ODC1P11926 461 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 HMGA1P17096 107 aaKnown RBP16.75■□□□□ 0.27
LIG1-214ENST00000597146 DDX6P26196 483 aaKnown RBP eCLIP16.75■□□□□ 0.277e-10■■■□□ 19.2
LIG1-214ENST00000597146 GPR15P49685 360 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 HMGN5P82970 282 aaKnown RBP16.75■□□□□ 0.27
LIG1-214ENST00000597146 USP4Q13107 963 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 EML3Q32P44 896 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 SFTPA1Q8IWL2 248 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 DAW1Q8N136 415 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 ADAMTS14Q8WXS8 1223 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 ATP2A3Q93084 1043 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 SENP8Q96LD8 212 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 ZCWPW1Q9H0M4 648 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 SCUBE2Q9NQ36 999 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 SLC6A14Q9UN76 642 aa16.75■□□□□ 0.27
LIG1-214ENST00000597146 SH3BP5O60239 455 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 C1QL1O75973 258 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 MCM7P33993 719 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 OPRD1P41143 372 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 GFPT1Q06210 699 aaPredicted RBP16.74■□□□□ 0.27
LIG1-214ENST00000597146 ZNF268Q14587 947 aaPredicted RBP16.74■□□□□ 0.27
LIG1-214ENST00000597146 TRIP6Q15654 476 aaKnown RBP16.74■□□□□ 0.27
LIG1-214ENST00000597146 ZBTB6Q15916 424 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 MAP7D1Q3KQU3 841 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 MON1AQ86VX9 555 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 DEFB119Q8N690 84 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 ALLCQ8N6M5 410 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 WHAMMQ8TF30 809 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 MRPS31Q92665 395 aaKnown RBP16.74■□□□□ 0.27
LIG1-214ENST00000597146 SLC22A12Q96S37 553 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 CAPN10Q9HC96 672 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 TRPC7Q9HCX4 862 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 ZDHHC4Q9NPG8 344 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 KMT5AQ9NQR1 393 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 ABI2Q9NYB9 513 aaPredicted RBP16.74■□□□□ 0.27
LIG1-214ENST00000597146 BCCIPQ9P287 314 aaKnown RBP eCLIP16.74■□□□□ 0.27
LIG1-214ENST00000597146 UBQLN1Q9UMX0 589 aaKnown RBP16.74■□□□□ 0.27
LIG1-214ENST00000597146 MAGED2Q9UNF1 606 aaPredicted RBP16.74■□□□□ 0.27
LIG1-214ENST00000597146 KIF3AQ9Y496 699 aa16.74■□□□□ 0.27
LIG1-214ENST00000597146 GOLGA4Q13439 2230 aaKnown RBP16.73■□□□□ 0.27
LIG1-214ENST00000597146 TTC26A0AVF1 554 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 SLC16A4O15374 487 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 HIP1RO75146 1068 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 ALDH1A2O94788 518 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 HAPLN1P10915 354 aaPredicted RBP16.73■□□□□ 0.27
LIG1-214ENST00000597146 TNFSF9P41273 254 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 FAM160A1Q05DH4 1040 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 DUOXA1Q1HG43 343 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 SDHAF4Q5VUM1 108 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 LRRTM3Q86VH5 581 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 EFCAB13Q8IY85 973 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 TXNDC5Q8NBS9 432 aaKnown RBP16.73■□□□□ 0.27
LIG1-214ENST00000597146 ERMNQ8TAM6 284 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 HAPLN2Q9GZV7 340 aa16.73■□□□□ 0.27
LIG1-214ENST00000597146 SGK1O00141 431 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 TOM1L1O75674 476 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 KLF8O95600 359 aaPredicted RBP16.72■□□□□ 0.27
LIG1-214ENST00000597146 SERPINF2P08697 491 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 CHRM1P11229 460 aaPredicted RBP16.72■□□□□ 0.27
LIG1-214ENST00000597146 CYP3A5P20815 502 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 LILRA4P59901 499 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 C19orf57Q0VDD7 668 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 MESP2Q0VG99 397 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 MAPK7Q13164 816 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 HNRNPDQ14103 355 aaKnown RBP16.72■□□□□ 0.27
LIG1-214ENST00000597146 GAB4Q2WGN9 574 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 LMBRD2Q68DH5 695 aaPredicted RBP16.72■□□□□ 0.27
LIG1-214ENST00000597146 CCDC26Q8TAB7 109 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 HMGB4Q8WW32 186 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 CYP2S1Q96SQ9 504 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 LINC00597Q9H2U6 94 aa16.72■□□□□ 0.27
LIG1-214ENST00000597146 MYO18BQ8IUG5 2567 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 LACTBL1A8MY62 500 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 HOXD12P35452 270 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 CCT6AP40227 531 aaKnown RBP16.71■□□□□ 0.27
LIG1-214ENST00000597146 DPP6P42658 865 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 PPP2R3AQ06190 1150 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 ZC2HC1CQ53FD0 456 aaPredicted RBP16.71■□□□□ 0.27
LIG1-214ENST00000597146 CEP76Q8TAP6 659 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 KIF2CQ99661 725 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 PLEKHA5Q9HAU0 1116 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 DNAAF2Q9NVR5 837 aaKnown RBP16.71■□□□□ 0.27
LIG1-214ENST00000597146 PCDHB9Q9Y5E1 797 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 HECTD1Q9ULT8 2610 aa16.71■□□□□ 0.27
LIG1-214ENST00000597146 MUC22E2RYF6 1773 aaPredicted RBP16.71■□□□□ 0.27
LIG1-214ENST00000597146 TCRBV21S2A2A0A5A6 115 aa16.7■□□□□ 0.26
LIG1-214ENST00000597146 ARHGAP33O14559 1287 aa16.7■□□□□ 0.26
LIG1-214ENST00000597146 CYP11A1P05108 521 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms