RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ZNF263O14978 683 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 RHOBTB3O94955 611 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 STAU1O95793 577 aaKnown RBP13.97□□□□□ -0.17
LIG1-212ENST00000596549 CSH1P0DML2 217 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 CSH2P0DML3 217 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 WEE1P30291 646 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 MYL6P60660 151 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 DLG4P78352 724 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 CLDN10P78369 228 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 PSMD2Q13200 908 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 ARHGAP15Q53QZ3 475 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 WDR44Q5JSH3 913 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 SPATA2LQ8IUW3 424 aaPredicted RBP13.97□□□□□ -0.17
LIG1-212ENST00000596549 C1orf210Q8IVY1 113 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 GOLGA5Q8TBA6 731 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 PARD3BQ8TEW8 1205 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 E2F7Q96AV8 911 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 CLDN23Q96B33 292 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 ELMO3Q96BJ8 720 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 TRMT2BQ96GJ1 504 aaKnown RBP13.97□□□□□ -0.17
LIG1-212ENST00000596549 PCED1BQ96HM7 432 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 FUBP3Q96I24 572 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIG1-212ENST00000596549 GCNAQ96QF7 691 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 SLC46A2Q9BY10 475 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 SCAND2PQ9GZW5 306 aaPredicted RBP13.97□□□□□ -0.17
LIG1-212ENST00000596549 DPEP3Q9H4B8 488 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 OBP2AQ9NY56 170 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 CDH9Q9ULB4 789 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 MAGED2Q9UNF1 606 aaPredicted RBP13.97□□□□□ -0.17
LIG1-212ENST00000596549 ATP6V1DQ9Y5K8 247 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 PIAS3Q9Y6X2 628 aa13.97□□□□□ -0.17
LIG1-212ENST00000596549 SLC38A8A6NNN8 435 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 PDXKO00764 312 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 CHADO15335 359 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 TACC1O75410 805 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 VNN1O95497 513 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 NR3C1P04150 777 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 SP9P0CG40 484 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 MAGEA11P43364 429 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 SOX9P48436 509 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 ZNF852Q6ZMS4 543 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 CMTM8Q8IZV2 173 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 MYRFLQ96LU7 910 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 MMS19Q96T76 1030 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 BCO2Q9BYV7 579 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 SMYD3Q9H7B4 428 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 VRTNQ9H8Y1 702 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 TMEM30AQ9NV96 361 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 NDRG2Q9UN36 371 aaKnown RBP13.96□□□□□ -0.17
LIG1-212ENST00000596549 CCL26Q9Y258 94 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 R3HCC1Q9Y3T6 440 aaKnown RBP13.96□□□□□ -0.17
LIG1-212ENST00000596549 R4GN57 208 aa13.96□□□□□ -0.17
LIG1-212ENST00000596549 C4BPAP04003 597 aaKnown RBP13.95□□□□□ -0.18
LIG1-212ENST00000596549 PDGFRBP09619 1106 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 RPS9P46781 194 aaKnown RBP13.95□□□□□ -0.18
LIG1-212ENST00000596549 RAP1GAPP47736 663 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 CACNA2D1P54289 1103 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 RPL10AP62906 217 aaKnown RBP13.95□□□□□ -0.18
LIG1-212ENST00000596549 TNNC1P63316 161 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 TAF12Q16514 161 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 WDR72Q3MJ13 1102 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 MDH1BQ5I0G3 518 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 C1orf220Q5T0J3 134 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 TXNDC8Q6A555 127 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 TXNDC11Q6PKC3 985 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 C4orf50Q6ZRC1 276 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 SCN4BQ8IWT1 228 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 MAB21L3Q8N8X9 362 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 BPIFB1Q8TDL5 484 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 FAM3CQ92520 227 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 USP13Q92995 863 aaPredicted RBP13.95□□□□□ -0.18
LIG1-212ENST00000596549 SDCBP2Q9H190 292 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 GTSE1Q9NYZ3 720 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 TRAF3IP3Q9Y228 551 aa13.95□□□□□ -0.18
LIG1-212ENST00000596549 EML5Q05BV3 1969 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 ZNF202O95125 648 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 BDNFP23560 247 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 CCNE1P24864 410 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 ATICP31939 592 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 CTHP32929 405 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 MAGEA9P43362 315 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 USP46P62068 366 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 CYP27A1Q02318 531 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 TNK2Q07912 1038 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 BIRC3Q13489 604 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 TRPC3Q13507 836 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 KCNB1Q14721 858 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 ZCWPW2Q504Y3 356 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 ARHGAP29Q52LW3 1261 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 SCARA5Q6ZMJ2 495 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 YAF2Q8IY57 180 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 OR6B3Q8NGW1 331 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 TTC8Q8TAM2 541 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 MYCBPAPQ8TBZ2 947 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 CSGALNACT1Q8TDX6 532 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 NKD2Q969F2 451 aaPredicted RBP13.94□□□□□ -0.18
LIG1-212ENST00000596549 SYAP1Q96A49 352 aaPredicted RBP13.94□□□□□ -0.18
LIG1-212ENST00000596549 CHFRQ96EP1 664 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 SLC22A12Q96S37 553 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 CHRDQ9H2X0 955 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms