RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CYP2J2P51589 502 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 ATXN1P54253 815 aaKnown RBP11.24□□□□□ -0.61
LIG3-212ENST00000590181 ARHGAP8P85298 464 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 DPYDQ12882 1025 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 BFSP1Q12934 665 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 SGSM1Q2NKQ1 1148 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 EDRF1Q3B7T1 1238 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 SLC44A4Q53GD3 710 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 INTS6LQ5JSJ4 861 aaKnown RBP11.24□□□□□ -0.61
LIG3-212ENST00000590181 FAM171BQ6P995 826 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 MAMSTRQ6ZN01 415 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 TPRG1Q6ZUI0 275 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 INTS8Q75QN2 995 aaKnown RBP11.24□□□□□ -0.61
LIG3-212ENST00000590181 MFSD6LQ8IWD5 586 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 ADGRF2Q8IZF7 708 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 TTC39CQ8N584 583 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 FSIP1Q8NA03 581 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 ATAD1Q8NBU5 361 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 OR10T2Q8NGX3 314 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 PARD3BQ8TEW8 1205 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 NOC3LQ8WTT2 800 aaKnown RBP11.24□□□□□ -0.61
LIG3-212ENST00000590181 EXOC4Q96A65 974 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 SPATA17Q96L03 361 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 MYRFLQ96LU7 910 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 LRRC3Q9BY71 257 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 KCTD10Q9H3F6 313 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 PRMT8Q9NR22 394 aaPredicted RBP11.24□□□□□ -0.61
LIG3-212ENST00000590181 THG1LQ9NWX6 298 aaKnown RBP11.24□□□□□ -0.61
LIG3-212ENST00000590181 ZSCAN32Q9NX65 697 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 SIX4Q9UIU6 781 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 GMEB2Q9UKD1 530 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 L1RE1Q9UN81 338 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 DENND4CQ5VZ89 1909 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 FAM170BA6NMN3 283 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 DPYSL4O14531 572 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 CLIC2O15247 247 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 CHADO15335 359 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 LILRB5O75023 590 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 PHACTR2O75167 634 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 VNN2O95498 520 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 MYL4P12829 197 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 CD72P21854 359 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 GTF2H1P32780 548 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 GNL1P36915 607 aaPredicted RBP11.23□□□□□ -0.61
LIG3-212ENST00000590181 RPS9P46781 194 aaKnown RBP11.23□□□□□ -0.61
LIG3-212ENST00000590181 TNNC1P63316 161 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 AMPD2Q01433 879 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 FAM160A1Q05DH4 1040 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 ST3GAL2Q16842 350 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 SLC5A9Q2M3M2 681 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 SOWAHAQ2M3V2 549 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 MGAT5BQ3V5L5 792 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 TSSK4Q6SA08 328 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 ZNF852Q6ZMS4 543 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 SPATA2LQ8IUW3 424 aaPredicted RBP11.23□□□□□ -0.61
LIG3-212ENST00000590181 NELFCDQ8IXH7 590 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 ZBTB44Q8NCP5 570 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 FAM200AQ8TCP9 573 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 ING5Q8WYH8 240 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 MCRS1Q96EZ8 462 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 TNIP3Q96KP6 325 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 PGLYRP2Q96PD5 576 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 RTKNQ9BST9 563 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 MKNK1Q9BUB5 465 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 IKZF4Q9H2S9 585 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 SNX25Q9H3E2 840 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 TASP1Q9H6P5 420 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 C8orf33Q9H7E9 229 aaPredicted RBP11.23□□□□□ -0.61
LIG3-212ENST00000590181 KIF9Q9HAQ2 790 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 MAGEC2Q9UBF1 373 aaPredicted RBP11.23□□□□□ -0.61
LIG3-212ENST00000590181 SLC27A5Q9Y2P5 690 aa11.23□□□□□ -0.61
LIG3-212ENST00000590181 DCDC2BA2VCK2 349 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 TRIM66O15016 1216 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 ATP8B3O60423 1300 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 NR3C1P04150 777 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 OR4Q2P0C623 313 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 KRT13P13646 458 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 PRKCSHP14314 528 aaPredicted RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 CEBPBP17676 345 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 TARSP26639 723 aaKnown RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 PSMC2P35998 433 aaKnown RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 FCHO2Q0JRZ9 810 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 ZNF268Q14587 947 aaPredicted RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 ZNF638Q14966 1978 aaKnown RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 WDR72Q3MJ13 1102 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 ARHGAP29Q52LW3 1261 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 FAM78AQ5JUQ0 283 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 FRYQ5TBA9 3013 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 FOXR2Q6PJQ5 311 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 LRRTM3Q86VH5 581 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 TMC8Q8IU68 726 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 YAF2Q8IY57 180 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 RDH13Q8NBN7 331 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 KIAA0895Q8NCT3 520 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 CCDC150Q8NCX0 1101 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 GLIS3Q8NEA6 775 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 ZSWIM2Q8NEG5 633 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 OR5B17Q8NGF7 314 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 ZSCAN18Q8TBC5 510 aaPredicted RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 MYCBPAPQ8TBZ2 947 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms