RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 RPL7AP62424 266 aaKnown RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 NKX3-2P78367 333 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 BEX3Q00994 111 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 DHX9Q08211 1270 aaKnown RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 TMEM62Q0P6H9 643 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 NFX1Q12986 1120 aaKnown RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 CRHR2Q13324 411 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 KLF1Q13351 362 aaPredicted RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 XKR4Q5GH76 650 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 ZFYVE27Q5T4F4 411 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 DRICH1Q6PGQ1 229 aaPredicted RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 XYLT1Q86Y38 959 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 HACE1Q8IYU2 909 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 ZDHHC14Q8IZN3 488 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 UBLCP1Q8WVY7 318 aaPredicted RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 PIK3R5Q8WYR1 880 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 TWNKQ96RR1 684 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 EIF2AQ9BY44 585 aaKnown RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 TXLNGYQ9BZA5 131 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 TRIM31Q9BZY9 425 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 UPF3AQ9H1J1 476 aaKnown RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 CDHR5Q9HBB8 845 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 ZDHHC18Q9NUE0 388 aa11.88□□□□□ -0.51
LIG3-204ENST00000585740 PIN4Q9Y237 131 aaKnown RBP11.88□□□□□ -0.51
LIG3-204ENST00000585740 BRCA2P51587 3418 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 GOLGA8SH3BPF8 625 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 RNF8O76064 485 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 GPD2P43304 727 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 PLTPP55058 493 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 KRT17Q04695 432 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 PDCLQ13371 301 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 SV2CQ496J9 727 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 CYP4A22Q5TCH4 519 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 AGBL2Q5U5Z8 902 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 C9orf57Q5W0N0 161 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 ARHGAP17Q68EM7 881 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 SPOCD1Q6ZMY3 1216 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 CCDC89Q8N998 374 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 C1orf54Q8WWF1 131 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 RIN2Q8WYP3 895 aaPredicted RBP11.87□□□□□ -0.51
LIG3-204ENST00000585740 ART4Q93070 314 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 SLITRK1Q96PX8 696 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 FOXP3Q9BZS1 431 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 TMBIM4Q9HC24 238 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 CYLDQ9NQC7 956 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 ASNSD1Q9NWL6 643 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 GRHL1Q9NZI5 618 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 HESX1Q9UBX0 185 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 TRPV2Q9Y5S1 764 aa11.87□□□□□ -0.51
LIG3-204ENST00000585740 PIRO00625 290 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 GJB6O95452 261 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ERBB2P04626 1255 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 C6orf222P0C671 652 aaPredicted RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 MYZAPP0CAP1 466 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 CYBAP13498 195 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 PCK1P35558 622 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 GJC1P36383 396 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 RPL21P46778 160 aaKnown RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 LMAN1P49257 510 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 TAF6P49848 677 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 PMS2P54278 862 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 MRPS6P82932 125 aaKnown RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 ZNF252P-AS1Q0IIN9 211 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 UAP1Q16222 522 aaPredicted RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 FBXO47Q5MNV8 452 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 CEP85LQ5SZL2 805 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 UBXN11Q5T124 520 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ZDHHC24Q6UX98 284 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 LEKR1Q6ZMV7 388 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ZNF365Q70YC5 407 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 HOOK3Q86VS8 718 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ZDHHC17Q8IUH5 632 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ARFGAP2Q8N6H7 521 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 TTC13Q8NBP0 860 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 STK32AQ8WU08 396 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 LENG1Q96BZ8 264 aaPredicted RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 SNF8Q96H20 258 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ATP6V1G3Q96LB4 118 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ZMAT2Q96NC0 199 aaKnown RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 CPXM1Q96SM3 734 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 NXF3Q9H4D5 531 aaKnown RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 METTL5Q9NRN9 209 aaKnown RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 GDAP2Q9NXN4 497 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 TUBGCP4Q9UGJ1 667 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 HMGXB4Q9UGU5 601 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 ASIC3Q9UHC3 531 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 CYTH4Q9UIA0 394 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 TSPAN16Q9UKR8 245 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 DRG1Q9Y295 367 aaKnown RBP11.86□□□□□ -0.51
LIG3-204ENST00000585740 SNX9Q9Y5X1 595 aa11.86□□□□□ -0.51
LIG3-204ENST00000585740 SZT2Q5T011 3432 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 hCG_1818297A0A087WSY0 165 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 SMIM28A0A1B0GU29 152 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 F8VP50 259 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 H0YGN5 161 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 DLL1O00548 723 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 DPYSL4O14531 572 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 ECM2O94769 699 aaPredicted RBP11.85□□□□□ -0.51
LIG3-204ENST00000585740 NUDT17P0C025 328 aa11.85□□□□□ -0.51
LIG3-204ENST00000585740 RARBP10826 455 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms