RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 PCED1BQ96HM7 432 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 B3GALT6Q96L58 329 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 TMEM209Q96SK2 561 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 LPIN3Q9BQK8 851 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 B3GNT5Q9BYG0 378 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 ZBP1Q9H171 429 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 LUC7LQ9NQ29 371 aaKnown RBP17.11■□□□□ 0.33
SS18-226ENST00000585241 SEPT11Q9NVA2 429 aaKnown RBP17.11■□□□□ 0.33
SS18-226ENST00000585241 PPP2R2CQ9Y2T4 447 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 CEP83Q9Y592 693 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 PCDHA13Q9Y5I0 950 aa17.11■□□□□ 0.33
SS18-226ENST00000585241 PDE4DIPQ5VU43 2346 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 PTPRDP23468 1912 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 M0QYV0 167 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 PJA2O43164 708 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 MYOGP15173 224 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 CTNNB1P35222 781 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 MAGEA1P43355 309 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 BCAT1P54687 386 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 UBE3AQ05086 875 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 SMARCB1Q12824 385 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 NAA35Q5VZE5 725 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 FAM35AQ86V20 835 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 DCP1BQ8IZD4 617 aaKnown RBP17.1■□□□□ 0.33
SS18-226ENST00000585241 MYLPFQ96A32 169 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 PDCL3Q9H2J4 239 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 TMLHEQ9NVH6 421 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 HESX1Q9UBX0 185 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 GTF3C4Q9UKN8 822 aa17.1■□□□□ 0.33
SS18-226ENST00000585241 YBX2Q9Y2T7 364 aaKnown RBP17.1■□□□□ 0.33
SS18-226ENST00000585241 ZSCAN12O43309 604 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 LILRB3O75022 631 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 URODP06132 367 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 CA3P07451 260 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 H2AFZP0C0S5 128 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 CTSAP10619 480 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 SSTR3P32745 418 aaPredicted RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 RPL34P49207 117 aaKnown RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 ERVK-21P61565 698 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 BST2Q10589 180 aaKnown RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 RAB30Q15771 203 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 PSMD5Q16401 504 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 NFE2Q16621 373 aaPredicted RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 PRSS55Q6UWB4 352 aaPredicted RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 RSPO2Q6UXX9 243 aaPredicted RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 H2AFVQ71UI9 128 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 MON1BQ7L1V2 547 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 PASD1Q8IV76 773 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 TDHQ8IZJ6 230 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 CCAR2Q8N163 923 aaKnown RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 VPS52Q8N1B4 723 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 TXLNBQ8N3L3 684 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 C1orf131Q8NDD1 294 aaKnown RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 STK32AQ8WU08 396 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 SLC35F5Q8WV83 523 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 RIN2Q8WYP3 895 aaPredicted RBP17.09■□□□□ 0.33
SS18-226ENST00000585241 FUBP3Q96I24 572 aaKnown RBP eCLIP17.09■□□□□ 0.33
SS18-226ENST00000585241 VCPIP1Q96JH7 1222 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 C17orf80Q9BSJ5 609 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 DUSP16Q9BY84 665 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 PBX4Q9BYU1 374 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 RXFP1Q9HBX9 757 aa17.09■□□□□ 0.33
SS18-226ENST00000585241 PLXNA4Q9HCM2 1894 aa17.08■□□□□ 0.33
SS18-226ENST00000585241 ANKRD62A6NC57 917 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 RCCD1A6NED2 376 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 CCP110O43303 1012 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 FTLP02792 175 aaPredicted RBP17.08■□□□□ 0.32
SS18-226ENST00000585241 NPR3P17342 541 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 MMP8P22894 467 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 ADORA2BP29275 332 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 NSFP46459 744 aaKnown RBP17.08■□□□□ 0.32
SS18-226ENST00000585241 PLA2G4AP47712 749 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 GALCP54803 685 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 GSCP56915 257 aaPredicted RBP17.08■□□□□ 0.32
SS18-226ENST00000585241 CREMQ03060 361 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 TAP1Q03518 808 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 C1QBPQ07021 282 aaKnown RBP17.08■□□□□ 0.32
SS18-226ENST00000585241 PTP4A2Q12974 167 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 GPR17Q13304 367 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 CFAP221Q4G0U5 840 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 KIAA1841Q6NSI8 718 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 C4orf50Q6ZRC1 276 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 REXO1L1PQ8IX06 675 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 MCOLN2Q8IZK6 566 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 SECISBP2LQ93073 1101 aaKnown RBP17.08■□□□□ 0.32
SS18-226ENST00000585241 SMARCD1Q96GM5 515 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 TGS1Q96RS0 853 aaKnown RBP17.08■□□□□ 0.32
SS18-226ENST00000585241 PACSIN1Q9BY11 444 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 CSNK1G1Q9HCP0 422 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 ABCB6Q9NP58 842 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 CYLDQ9NQC7 956 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.08■□□□□ 0.32
SS18-226ENST00000585241 FNIP2Q9P278 1114 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 CYTH4Q9UIA0 394 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 SSX2IPQ9Y2D8 614 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 IRAK3Q9Y616 596 aa17.08■□□□□ 0.32
SS18-226ENST00000585241 BTNL10A8MVZ5 291 aa17.07■□□□□ 0.32
SS18-226ENST00000585241 CLDN5O00501 218 aa17.07■□□□□ 0.32
SS18-226ENST00000585241 XPO1O14980 1071 aaKnown RBP17.07■□□□□ 0.32
SS18-226ENST00000585241 OR4Q2P0C623 313 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms