RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 TCHHQ07283 1943 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 CHADO15335 359 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 SMC2O95347 1197 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 KRT13P13646 458 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 NR2F2P24468 414 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 LMO2P25791 158 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 ANXA13P27216 316 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 WEE1P30291 646 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 AVPR1AP37288 418 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 MAGEA9P43362 315 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 MAGEA11P43364 429 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 GPR15P49685 360 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 PSMC1P62191 440 aaKnown RBP13.23□□□□□ -0.29
SS18-225ENST00000585121 CYP27A1Q02318 531 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 ANGPT1Q15389 498 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 ZNF667Q5HYK9 610 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 STXBP5Q5T5C0 1151 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 VSTM1Q6UX27 236 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 MYLPFQ96A32 169 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 IL21Q9HBE4 155 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 LTB4R2Q9NPC1 389 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 FAM86C1Q9NVL1 165 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 THG1LQ9NWX6 298 aaKnown RBP13.23□□□□□ -0.29
SS18-225ENST00000585121 MAPK8IP1Q9UQF2 711 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 SLC38A8A6NNN8 435 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 SOBPA7XYQ1 873 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 A8MXQ7 604 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 IKBKBO14920 756 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 MAPK13O15264 365 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 HCRTO43612 131 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 ATP2C2O75185 946 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 NOL4O94818 638 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 C4BPAP04003 597 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 GLULP15104 373 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 HMGA1P17096 107 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 CD72P21854 359 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 GRIK1P39086 918 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 TSC2P49815 1807 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 NLRP12P59046 1061 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 CLDN10P78369 228 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 PLCB2Q00722 1185 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 ADAM9Q13443 819 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 NFIL3Q16649 462 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 SGSM1Q2NKQ1 1148 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 ARHGAP29Q52LW3 1261 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 MDH1BQ5I0G3 518 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 SDHAF4Q5VUM1 108 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 TDRD10Q5VZ19 366 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 INTS8Q75QN2 995 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 FMR1NBQ8N0W7 255 aaPredicted RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 CELF5Q8N6W0 485 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 MYCBPAPQ8TBZ2 947 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 TRMT2BQ96GJ1 504 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 CEP295NLQ96MC4 621 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 MRPL45Q9BRJ2 306 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 GTPBP4Q9BZE4 634 aaKnown RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 GZF1Q9H116 711 aaPredicted RBP13.22□□□□□ -0.29
SS18-225ENST00000585121 VRTNQ9H8Y1 702 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 EHD2Q9NZN4 543 aa13.22□□□□□ -0.29
SS18-225ENST00000585121 ATP8B3O60423 1300 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 TRIM66O15016 1216 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 F11P03951 625 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 PTPN1P18031 435 aaKnown RBP13.21□□□□□ -0.29
SS18-225ENST00000585121 TRIM21P19474 475 aaKnown RBP13.21□□□□□ -0.29
SS18-225ENST00000585121 BDNFP23560 247 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 PSMC2P35998 433 aaKnown RBP13.21□□□□□ -0.29
SS18-225ENST00000585121 VAMP7P51809 220 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 KPNA1P52294 538 aaPredicted RBP13.21□□□□□ -0.29
SS18-225ENST00000585121 FAM160A1Q05DH4 1040 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 FCHO2Q0JRZ9 810 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 C1orf228Q6PIY5 440 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 GPIHBP1Q8IV16 184 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 C1orf210Q8IVY1 113 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 CMTM8Q8IZV2 173 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 MAB21L3Q8N8X9 362 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 PLEKHO2Q8TD55 490 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 BPIFB1Q8TDL5 484 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 TAF4BQ92750 862 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 MSANTD3Q96H12 275 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 SPATA17Q96L03 361 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 MKNK1Q9BUB5 465 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 SLC46A2Q9BY10 475 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 IMPG2Q9BZV3 1241 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 XYLT2Q9H1B5 865 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 C8orf33Q9H7E9 229 aaPredicted RBP13.21□□□□□ -0.29
SS18-225ENST00000585121 CRTAC1Q9NQ79 661 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 PIAS3Q9Y6X2 628 aa13.21□□□□□ -0.29
SS18-225ENST00000585121 PIK3CAP42336 1068 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 PNOCQ13519 176 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 MON1AQ86VX9 555 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 FAM186BQ8IYM0 893 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 CCDC150Q8NCX0 1101 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 SMARCE1Q969G3 411 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 PCED1BQ96HM7 432 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 TNIP3Q96KP6 325 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 MYRFLQ96LU7 910 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 GSDMAQ96QA5 445 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 PHOX2BQ99453 314 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 TSG101Q99816 390 aa13.2□□□□□ -0.3
SS18-225ENST00000585121 KIF9Q9HAQ2 790 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms