RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GPR161Q8N6U8 529 aaKnown RBP21.96■■□□□ 1.11
SHMT1-209ENST00000582653 LEO1Q8WVC0 666 aaPredicted RBP21.96■■□□□ 1.11
SHMT1-209ENST00000582653 RMDN1Q96DB5 314 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 HPDLQ96IR7 371 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 PKMYT1Q99640 499 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 SMG9Q9H0W8 520 aaKnown RBP21.96■■□□□ 1.11
SHMT1-209ENST00000582653 KIAA1586Q9HCI6 787 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 ZDHHC9Q9Y397 364 aa21.96■■□□□ 1.11
SHMT1-209ENST00000582653 R3HCC1Q9Y3T6 440 aaKnown RBP21.96■■□□□ 1.11
SHMT1-209ENST00000582653 PVALEFA0A1B0GWK0 134 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 GABRDO14764 452 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 PRAMEF12O95522 483 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 CST3P01034 146 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-209ENST00000582653 CSH1P0DML2 217 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 CSH2P0DML3 217 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 DLATP10515 647 aaKnown RBP21.95■■□□□ 1.1
SHMT1-209ENST00000582653 DDX6P26196 483 aaKnown RBP eCLIP21.95■■□□□ 1.1
SHMT1-209ENST00000582653 CTHP32929 405 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 LHX1P48742 406 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 NLRP12P59046 1061 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 MYO1EQ12965 1108 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 DDR2Q16832 855 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 TXNDC11Q6PKC3 985 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 WDR49Q8IV35 697 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 TTC8Q8TAM2 541 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 CCDC127Q96BQ5 260 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 ABCB6Q9NP58 842 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 NCDNQ9UBB6 729 aa21.95■■□□□ 1.1
SHMT1-209ENST00000582653 MAGED2Q9UNF1 606 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-209ENST00000582653 ATP2C2O75185 946 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 TNNI1P19237 187 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 LMO2P25791 158 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 RPL10AP62906 217 aaKnown RBP21.94■■□□□ 1.1
SHMT1-209ENST00000582653 TRAPPC11Q7Z392 1133 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 CEP57L1Q8IYX8 460 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 MAB21L3Q8N8X9 362 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 XXYLT1Q8NBI6 393 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 SECISBP2LQ93073 1101 aaKnown RBP21.94■■□□□ 1.1
SHMT1-209ENST00000582653 PAGE5Q96GU1 130 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 FAM83CQ9BQN1 747 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 GKN1Q9NS71 199 aa21.94■■□□□ 1.1
SHMT1-209ENST00000582653 DNAH14Q0VDD8 3507 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 A0A1B0GVL5 298 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 ACTN4O43707 911 aaKnown RBP21.93■■□□□ 1.1
SHMT1-209ENST00000582653 KLRC4O43908 158 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 UBE4BO95155 1302 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 SLFN14P0C7P3 912 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 AVPR1AP37288 418 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 SATB1Q01826 763 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 TNK2Q07912 1038 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 CYP24A1Q07973 514 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 ITPRIPL2Q3MIP1 535 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 WDR44Q5JSH3 913 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 HS2ST1Q7LGA3 356 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 LIMS2Q7Z4I7 341 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 MON1AQ86VX9 555 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 SYNPOQ8N3V7 929 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 KBTBD7Q8WVZ9 684 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 MYRFLQ96LU7 910 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 RBM12Q9NTZ6 932 aaKnown RBP21.93■■□□□ 1.1
SHMT1-209ENST00000582653 TDP1Q9NUW8 608 aa21.93■■□□□ 1.1
SHMT1-209ENST00000582653 SMG5Q9UPR3 1016 aaKnown RBP21.93■■□□□ 1.1
SHMT1-209ENST00000582653 OTOGLQ3ZCN5 2332 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 PAPSS2O95340 614 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 PCSK1P29120 753 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 PSMC1P62191 440 aaKnown RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 STK4Q13043 487 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 PUM1Q14671 1186 aaKnown RBP eCLIP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 PSMD6Q15008 389 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 KNOP1Q1ED39 458 aaKnown RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 BMT2Q1RMZ1 405 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 CFAP221Q4G0U5 840 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 TXNDC8Q6A555 127 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 FAM171BQ6P995 826 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 SPATA2LQ8IUW3 424 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 ZNF516Q92618 1163 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 MRPS31Q92665 395 aaKnown RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 USP13Q92995 863 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 TRMT2BQ96GJ1 504 aaKnown RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 FNBP1Q96RU3 617 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 MMS19Q96T76 1030 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 CGRRF1Q99675 332 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 GZF1Q9H116 711 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 DLL3Q9NYJ7 618 aa21.92■■□□□ 1.1
SHMT1-209ENST00000582653 UXTQ9UBK9 157 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 NUP210Q8TEM1 1887 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-209ENST00000582653 DMXL1Q9Y485 3027 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 NOL4O94818 638 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 PDGFRBP09619 1106 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 PFKFB1P16118 471 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 SNRPFP62306 86 aaKnown RBP21.91■■□□□ 1.1
SHMT1-209ENST00000582653 CCINQ13939 588 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 PON2Q15165 354 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 FUBP3Q96I24 572 aaKnown RBP eCLIP21.91■■□□□ 1.1
SHMT1-209ENST00000582653 SPATA32Q96LK8 384 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 KIF9Q9HAQ2 790 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 CCL26Q9Y258 94 aa21.91■■□□□ 1.1
SHMT1-209ENST00000582653 CMA1P23946 247 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 CASP4P49662 377 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 RUNX3Q13761 415 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms