RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MON1BQ7L1V2 547 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 LHX5Q9H2C1 402 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 OSGEPQ9NPF4 335 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 MYO1AQ9UBC5 1043 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 INSL6Q9Y581 213 aa26.6■■□□□ 1.85
SHMT1-207ENST00000580002 ANKRD62A6NC57 917 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 SYN3O14994 580 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 FANCGO15287 622 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 TLL1O43897 1013 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 MOCS3O95396 460 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 GJB6O95452 261 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 NSFP46459 744 aaKnown RBP26.59■■□□□ 1.85
SHMT1-207ENST00000580002 RGS7P49802 495 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 PDE4CQ08493 712 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 PTPN20Q4JDL3 420 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 FAM171BQ6P995 826 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 NYAP1Q6ZVC0 841 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 FIBCD1Q8N539 461 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 TMEM35BQ8NCS4 154 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 CPXM1Q96SM3 734 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 SLC9A7Q96T83 725 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 RAD9AQ99638 391 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 ZNF518BQ9C0D4 1074 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 NR2E3Q9Y5X4 410 aa26.59■■□□□ 1.85
SHMT1-207ENST00000580002 PCSK1P29120 753 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 CYP4A22Q5TCH4 519 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 PMF1Q6P1K2 205 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 ZNF662Q6ZS27 426 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 RNF168Q8IYW5 571 aaPredicted RBP26.58■■□□□ 1.85
SHMT1-207ENST00000580002 THEM5Q8N1Q8 247 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 HNRNPABQ99729 332 aaKnown RBP26.58■■□□□ 1.85
SHMT1-207ENST00000580002 COG5Q9UP83 839 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 LAMA3Q16787 3333 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 LSM8O95777 96 aaKnown RBP26.58■■□□□ 1.85
SHMT1-207ENST00000580002 TMEM253P0C7T8 217 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 LAG3P18627 525 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 RRM1P23921 792 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 PHF13Q86YI8 300 aaPredicted RBP26.58■■□□□ 1.85
SHMT1-207ENST00000580002 MYCBPAPQ8TBZ2 947 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 PHOSPHO2Q8TCD6 241 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 MYLPFQ96A32 169 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 ZNF653Q96CK0 615 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 MED10Q9BTT4 135 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 ADAM22Q9P0K1 906 aa26.58■■□□□ 1.85
SHMT1-207ENST00000580002 CCP110O43303 1012 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 RPL17P18621 184 aaKnown RBP26.57■■□□□ 1.84
SHMT1-207ENST00000580002 MMP8P22894 467 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 CTXN3Q4LDR2 81 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 ANKRD52Q8NB46 1076 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 SPATA18Q8TC71 538 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 TTPALQ9BTX7 342 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 SPG21Q9NZD8 308 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 CAPN6Q9Y6Q1 641 aa26.57■■□□□ 1.84
SHMT1-207ENST00000580002 C2CD2LO14523 706 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 ADAM12O43184 909 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 KRT86O43790 486 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 GPC5P78333 572 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.56■■□□□ 1.84
SHMT1-207ENST00000580002 SLC35G2Q8TBE7 412 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 SP7Q8TDD2 431 aaPredicted RBP26.56■■□□□ 1.84
SHMT1-207ENST00000580002 SLC35F5Q8WV83 523 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 AUTS2Q8WXX7 1259 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 CTNNBL1Q8WYA6 563 aaPredicted RBP26.56■■□□□ 1.84
SHMT1-207ENST00000580002 WDR24Q96S15 920 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 INTUQ9ULD6 942 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 KIAA1671Q9BY89 1806 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 ERBB2P04626 1255 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 ARPP19P56211 112 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 PTPN14Q15678 1187 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 ERICH1Q86X53 443 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 RNPC3Q96LT9 517 aaKnown RBP26.56■■□□□ 1.84
SHMT1-207ENST00000580002 KCNK16Q96T55 309 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 ZCWPW1Q9H0M4 648 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 GOLPH3Q9H4A6 298 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 LUC7LQ9NQ29 371 aaKnown RBP26.56■■□□□ 1.84
SHMT1-207ENST00000580002 HESX1Q9UBX0 185 aa26.56■■□□□ 1.84
SHMT1-207ENST00000580002 CNOT8Q9UFF9 292 aaKnown RBP26.56■■□□□ 1.84
SHMT1-207ENST00000580002 TBC1D4O60343 1298 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 PDCLQ13371 301 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 SLC39A12Q504Y0 691 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 FAM35AQ86V20 835 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 RIN2Q8WYP3 895 aaPredicted RBP26.55■■□□□ 1.84
SHMT1-207ENST00000580002 TMEM169Q96HH4 297 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 SMOQ99835 787 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 TRIM7Q9C029 511 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 ST7Q9NRC1 585 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 CEP83Q9Y592 693 aa26.55■■□□□ 1.84
SHMT1-207ENST00000580002 ARHGEF37A1IGU5 675 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 CYP1A2P05177 515 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 BDNFP23560 247 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 ELAVL2Q12926 359 aaKnown RBP26.54■■□□□ 1.84
SHMT1-207ENST00000580002 STILQ15468 1287 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 ZNF569Q5MCW4 686 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 ZMIZ2Q8NF64 920 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 CLP1Q92989 425 aaKnown RBP26.54■■□□□ 1.84
SHMT1-207ENST00000580002 BTBD6Q96KE9 485 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 PGLYRP2Q96PD5 576 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 DUSP16Q9BY84 665 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 CHST7Q9NS84 486 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 KRT82Q9NSB4 513 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms