RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 TRPV5Q9NQA5 729 aa16.58■□□□□ 0.24
SF3B3-215ENST00000577085 NDRG2Q9UN36 371 aaKnown RBP16.58■□□□□ 0.24
SF3B3-215ENST00000577085 MAPK8IP1Q9UQF2 711 aa16.58■□□□□ 0.24
SF3B3-215ENST00000577085 PIAS3Q9Y6X2 628 aa16.58■□□□□ 0.24
SF3B3-215ENST00000577085 SLC38A8A6NNN8 435 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 CHADO15335 359 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 GFRA3O60609 400 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 ATP2C2O75185 946 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 LRRN2O75325 713 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 TACC1O75410 805 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 P4HA1P13674 534 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 NR2F2P24468 414 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 NLRP12P59046 1061 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 NCOA4Q13772 614 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 ARHGAP29Q52LW3 1261 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 ZNF667Q5HYK9 610 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 FAM171BQ6P995 826 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 CMTM8Q8IZV2 173 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 CELF5Q8N6W0 485 aaKnown RBP16.57■□□□□ 0.24
SF3B3-215ENST00000577085 MAB21L3Q8N8X9 362 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 FAM3CQ92520 227 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 ZNF516Q92618 1163 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 PKMYT1Q99640 499 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 MRPL45Q9BRJ2 306 aaKnown RBP16.57■□□□□ 0.24
SF3B3-215ENST00000577085 IL21Q9HBE4 155 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 TRPC7Q9HCX4 862 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 DMAC2Q9NW81 257 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 RMND1Q9NWS8 449 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 OBP2AQ9NY56 170 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 EHD2Q9NZN4 543 aa16.57■□□□□ 0.24
SF3B3-215ENST00000577085 HOOK1Q9UJC3 728 aaKnown RBP16.57■□□□□ 0.24
SF3B3-215ENST00000577085 MTF2Q9Y483 593 aaPredicted RBP16.57■□□□□ 0.24
SF3B3-215ENST00000577085 LRRIQ3A6PVS8 624 aaPredicted RBP16.56■□□□□ 0.24
SF3B3-215ENST00000577085 A8MXQ7 604 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 TRIM66O15016 1216 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 STAU1O95793 577 aaKnown RBP16.56■□□□□ 0.24
SF3B3-215ENST00000577085 FAM163BP0C2L3 166 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 KRT13P13646 458 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 GLULP15104 373 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 HMGA1P17096 107 aaKnown RBP16.56■□□□□ 0.24
SF3B3-215ENST00000577085 TRIM21P19474 475 aaKnown RBP16.56■□□□□ 0.24
SF3B3-215ENST00000577085 BDNFP23560 247 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 MAGEA11P43364 429 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 FCHO2Q0JRZ9 810 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 KCNB1Q14721 858 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 CCDC142Q17RM4 750 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 MDH1BQ5I0G3 518 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 TDRD10Q5VZ19 366 aaKnown RBP16.56■□□□□ 0.24
SF3B3-215ENST00000577085 C1orf228Q6PIY5 440 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 ZC3H14Q6PJT7 736 aaKnown RBP16.56■□□□□ 0.24
SF3B3-215ENST00000577085 VSTM1Q6UX27 236 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 LIMS2Q7Z4I7 341 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 FRMD5Q7Z6J6 570 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 STKLD1Q8NE28 680 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 MYCBPAPQ8TBZ2 947 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 BPIFB1Q8TDL5 484 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 TMEM174Q8WUU8 243 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 NKD2Q969F2 451 aaPredicted RBP16.56■□□□□ 0.24
SF3B3-215ENST00000577085 MSANTD3Q96H12 275 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 MKNK1Q9BUB5 465 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 SLC46A2Q9BY10 475 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 DLGAP2Q9P1A6 1054 aa16.56■□□□□ 0.24
SF3B3-215ENST00000577085 LAMTOR5O43504 91 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 NOL4O94818 638 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 PRAMEF12O95522 483 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 TARSP26639 723 aaKnown RBP16.55■□□□□ 0.24
SF3B3-215ENST00000577085 WEE1P30291 646 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 NBL1P41271 181 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 PLCB2Q00722 1185 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 SGSM1Q2NKQ1 1148 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 TXNDC8Q6A555 127 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 CC2D1AQ6P1N0 951 aaPredicted RBP16.55■□□□□ 0.24
SF3B3-215ENST00000577085 GUF1Q8N442 669 aaKnown RBP16.55■□□□□ 0.24
SF3B3-215ENST00000577085 TTC16Q8NEE8 873 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 RSPRY1Q96DX4 576 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 TRMT2BQ96GJ1 504 aaKnown RBP16.55■□□□□ 0.24
SF3B3-215ENST00000577085 PCED1BQ96HM7 432 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 IMPG2Q9BZV3 1241 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 SMG9Q9H0W8 520 aaKnown RBP16.55■□□□□ 0.24
SF3B3-215ENST00000577085 CRTAC1Q9NQ79 661 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 TRAF3IP3Q9Y228 551 aa16.55■□□□□ 0.24
SF3B3-215ENST00000577085 ATP8B3O60423 1300 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 SOBPA7XYQ1 873 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 IKBKBO14920 756 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 SMC2O95347 1197 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 F11P03951 625 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 PTPN1P18031 435 aaKnown RBP16.54■□□□□ 0.24
SF3B3-215ENST00000577085 CCNE1P24864 410 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 PIK3CAP42336 1068 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 VAMP7P51809 220 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 DLG4P78352 724 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 CLDN10P78369 228 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 SCARA5Q6ZMJ2 495 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 DENND5BQ6ZUT9 1274 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 INTS8Q75QN2 995 aaKnown RBP16.54■□□□□ 0.24
SF3B3-215ENST00000577085 MON1AQ86VX9 555 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 B3GALNT2Q8NCR0 500 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 CCDC150Q8NCX0 1101 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 PLEKHO2Q8TD55 490 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 TMC2Q8TDI7 906 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms