RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 UXTQ9UBK9 157 aaPredicted RBP16.28■□□□□ 0.2
SMG6-220ENST00000576218 ARMCX3Q9UH62 379 aaPredicted RBP16.28■□□□□ 0.2
SMG6-220ENST00000576218 CA14Q9ULX7 337 aa16.28■□□□□ 0.2
SMG6-220ENST00000576218 TECTAO75443 2155 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 TRIM66O15016 1216 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 ECI2O75521 394 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 PTPN1P18031 435 aaKnown RBP16.27■□□□□ 0.2
SMG6-220ENST00000576218 BDNFP23560 247 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 GTF2H1P32780 548 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 CDH8P55286 799 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 NOP14P78316 857 aaKnown RBP16.27■□□□□ 0.2
SMG6-220ENST00000576218 CYP4F8P98187 520 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 PFKPQ01813 784 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 ENPEPQ07075 957 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 PPP3CAQ08209 521 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 PAK1Q13153 545 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 MORC3Q14149 939 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 WDR44Q5JSH3 913 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 FAM78AQ5JUQ0 283 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 SPOPLQ6IQ16 392 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 LIMS2Q7Z4I7 341 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 BMP8AQ7Z5Y6 402 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 STKLD1Q8NE28 680 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 MYCBPAPQ8TBZ2 947 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 SMARCD2Q92925 531 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 RPP25Q9BUL9 199 aaKnown RBP16.27■□□□□ 0.2
SMG6-220ENST00000576218 CRTAC1Q9NQ79 661 aa16.27■□□□□ 0.2
SMG6-220ENST00000576218 SLC38A8A6NNN8 435 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 ASS1P00966 412 aaKnown RBP16.26■□□□□ 0.19
SMG6-220ENST00000576218 PDGFBP01127 241 aaPredicted RBP16.26■□□□□ 0.19
SMG6-220ENST00000576218 MAGEA11P43364 429 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 PMS1P54277 932 aaKnown RBP16.26■□□□□ 0.19
SMG6-220ENST00000576218 STX17P56962 302 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 GRM2Q14416 872 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 C1orf220Q5T0J3 134 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 FAM171BQ6P995 826 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 VSTM1Q6UX27 236 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 TRIML1Q8N9V2 468 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 B3GALNT2Q8NCR0 500 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 FBXL13Q8NEE6 735 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 TAS1R2Q8TE23 839 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 MRPS31Q92665 395 aaKnown RBP16.26■□□□□ 0.19
SMG6-220ENST00000576218 ELSPBP1Q96BH3 223 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 PCED1BQ96HM7 432 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 CEP63Q96MT8 703 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 ASB16Q96NS5 453 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 IPO9Q96P70 1041 aaKnown RBP16.26■□□□□ 0.19
SMG6-220ENST00000576218 PKMYT1Q99640 499 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 DPEP3Q9H4B8 488 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 METTL14Q9HCE5 456 aaKnown RBP16.26■□□□□ 0.19
SMG6-220ENST00000576218 ARHGEF3Q9NR81 526 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 WNT16Q9UBV4 365 aa16.26■□□□□ 0.19
SMG6-220ENST00000576218 CD44P16070 742 aaKnown RBP16.25■□□□□ 0.19
SMG6-220ENST00000576218 CD58P19256 250 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 AVPR1AP37288 418 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 GPC5P78333 572 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 IFRD2Q12894 506 aaPredicted RBP16.25■□□□□ 0.19
SMG6-220ENST00000576218 STXBP5Q5T5C0 1151 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 TANGO2Q6ICL3 276 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 GAREM2Q75VX8 874 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 E2F7Q96AV8 911 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 ZSWIM3Q96MP5 696 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 TRMT61BQ9BVS5 477 aaKnown RBP16.25■□□□□ 0.19
SMG6-220ENST00000576218 LRRC3Q9BY71 257 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 ELOVL4Q9GZR5 314 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 NIF3L1Q9GZT8 377 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 BRD9Q9H8M2 597 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 TRPC7Q9HCX4 862 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 EHD2Q9NZN4 543 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 KIAA1468Q9P260 1216 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 RAPGEFL1Q9UHV5 662 aa16.25■□□□□ 0.19
SMG6-220ENST00000576218 NOTCH4Q99466 2003 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 MOSPD3O75425 235 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 FGFR1OPO95684 399 aaKnown RBP16.24■□□□□ 0.19
SMG6-220ENST00000576218 VIPR2P41587 438 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 NDST1P52848 882 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 CETN1Q12798 172 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 ORC1Q13415 861 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 ACOT1Q86TX2 421 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 CREBRFQ8IUR6 639 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 TTC16Q8NEE8 873 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 DEPDC1BQ8WUY9 529 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 SHDQ96IW2 340 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 NUP62CLQ9H1M0 184 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 TASP1Q9H6P5 420 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 SLC2A4RGQ9NR83 387 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 RAB20Q9NX57 234 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 ZMYM5Q9UJ78 669 aa16.24■□□□□ 0.19
SMG6-220ENST00000576218 PPP1R3GB7ZBB8 358 aa16.23■□□□□ 0.19
SMG6-220ENST00000576218 F8VP50 259 aa16.23■□□□□ 0.19
SMG6-220ENST00000576218 NRG2O14511 850 aaPredicted RBP16.23■□□□□ 0.19
SMG6-220ENST00000576218 PSMC3P17980 439 aa16.23■□□□□ 0.19
SMG6-220ENST00000576218 DDX6P26196 483 aaKnown RBP eCLIP16.23■□□□□ 0.19
SMG6-220ENST00000576218 GDI1P31150 447 aa16.23■□□□□ 0.19
SMG6-220ENST00000576218 ASPAP45381 313 aa16.23■□□□□ 0.19
SMG6-220ENST00000576218 NLRP12P59046 1061 aa16.23■□□□□ 0.19
SMG6-220ENST00000576218 TPD52L1Q16890 204 aaPredicted RBP16.23■□□□□ 0.19
SMG6-220ENST00000576218 ASTLQ6HA08 431 aaPredicted RBP16.23■□□□□ 0.19
SMG6-220ENST00000576218 DENND5BQ6ZUT9 1274 aa16.23■□□□□ 0.19
SMG6-220ENST00000576218 FRMD5Q7Z6J6 570 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms