RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ACCSQ96QU6 501 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 ACBD6Q9BR61 282 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 PANK2Q9BZ23 570 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 ZMYND15Q9H091 742 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 GZF1Q9H116 711 aaPredicted RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 EBF3Q9H4W6 596 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 PCIF1Q9H4Z3 704 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 MRPL44Q9H9J2 332 aaKnown RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 PDE11AQ9HCR9 933 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 GDAP2Q9NXN4 497 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 DDX43Q9NXZ2 648 aaKnown RBP7.23□□□□□ -1.25
VPS53-213ENST00000572334 GCNT4Q9P109 453 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 GTF3C4Q9UKN8 822 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 PCDHB5Q9Y5E4 795 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 ASPMQ8IZT6 3477 aa7.23□□□□□ -1.25
VPS53-213ENST00000572334 DCDC2BA2VCK2 349 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 PRR5-ARHGAP8B1AHC4 643 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 DPYSL4O14531 572 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 TRDMT1O14717 391 aaKnown RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 GDF9O60383 454 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 LRP3O75074 770 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 ATP2C2O75185 946 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 PRPF40AO75400 957 aaKnown RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 GCNT3O95395 438 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 EGFP01133 1207 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 CHRM1P11229 460 aaPredicted RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 LMO2P25791 158 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 NASPP49321 788 aaPredicted RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 ARHGAP8P85298 464 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 PLCB2Q00722 1185 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 LMNB2Q03252 620 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 CEBPZQ03701 1054 aaKnown RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 EHHADHQ08426 723 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 USP4Q13107 963 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 RUNX3Q13761 415 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 SIM2Q14190 667 aaPredicted RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 BECN1Q14457 450 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 ZNF268Q14587 947 aaPredicted RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 VEPH1Q14D04 833 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 ZNF77Q15935 545 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 GAB4Q2WGN9 574 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 ITPRIPL2Q3MIP1 535 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 ARHGAP15Q53QZ3 475 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 HEATR6Q6AI08 1181 aaKnown RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 PRR23BQ6ZRT6 265 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 EPM2AIP1Q7L775 607 aaPredicted RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 WDR5BQ86VZ2 330 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 LONP2Q86WA8 852 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 CBWD2Q8IUF1 395 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 DCP1BQ8IZD4 617 aaKnown RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 TMEM86AQ8N2M4 240 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 SYNPOQ8N3V7 929 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 FAM160A2Q8N612 972 aaPredicted RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 CSGALNACT2Q8N6G5 542 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 LRRC52Q8N7C0 313 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 TRMT2BQ96GJ1 504 aaKnown RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 ZNF560Q96MR9 790 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 CYP2S1Q96SQ9 504 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 MTMR12Q9C0I1 747 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 ABCB6Q9NP58 842 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 CRTAC1Q9NQ79 661 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 SEMA4GQ9NTN9 838 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 TDP1Q9NUW8 608 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 TMEM30AQ9NV96 361 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 PANK4Q9NVE7 773 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 INTS13Q9NVM9 706 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 KBTBD4Q9NVX7 518 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 RBAKQ9NYW8 714 aaPredicted RBP7.22□□□□□ -1.25
VPS53-213ENST00000572334 CCDC39Q9UFE4 941 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 ITGA11Q9UKX5 1188 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 USP18Q9UMW8 372 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 WDFY3Q8IZQ1 3526 aa7.22□□□□□ -1.25
VPS53-213ENST00000572334 C2orf78A6NCI8 922 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 SOBPA7XYQ1 873 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 SLC30A4O14863 429 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 TM4SF5O14894 197 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 TGFB1I1O43294 461 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 LDHAP00338 332 aaKnown RBP7.21□□□□□ -1.26
VPS53-213ENST00000572334 CST3P01034 146 aaPredicted RBP7.21□□□□□ -1.26
VPS53-213ENST00000572334 CSH1P0DML2 217 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CSH2P0DML3 217 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 IDEP14735 1019 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 PTMSP20962 102 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 DDX6P26196 483 aaKnown RBP eCLIP7.21□□□□□ -1.26
VPS53-213ENST00000572334 CNR2P34972 360 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 GJA4P35212 333 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 PNPLA4P41247 253 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 STAT6P42226 847 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 RAP1GAPP47736 663 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 PXNP49023 591 aaPredicted RBP7.21□□□□□ -1.26
VPS53-213ENST00000572334 GALK1P51570 392 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 USP46P62068 366 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 TSPY1Q01534 308 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 BFSP1Q12934 665 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 PPP2R5DQ14738 602 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CSRP2Q16527 193 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 NFE2Q16621 373 aaPredicted RBP7.21□□□□□ -1.26
VPS53-213ENST00000572334 EML3Q32P44 896 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CFAP221Q4G0U5 840 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CCDC73Q6ZRK6 1079 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms