RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 DTWD2Q8NBA8 298 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 PJA1Q8NG27 643 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 OR6B3Q8NGW1 331 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 SPATA20Q8TB22 786 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 MYCBPAPQ8TBZ2 947 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 RSPRY1Q96DX4 576 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 MYRFLQ96LU7 910 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 GSDMAQ96QA5 445 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 DLGAP2Q9P1A6 1054 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 MAGEC2Q9UBF1 373 aaPredicted RBP21.69■■□□□ 1.06
CLK3-225ENST00000569063 NME7Q9Y5B8 376 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 NCANO14594 1321 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 SOBPA7XYQ1 873 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 H0Y858 1186 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 AKAP3O75969 853 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 NOL4O94818 638 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 GDI1P31150 447 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 VAMP7P51809 220 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 CYP4F8P98187 520 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 SGSM1Q2NKQ1 1148 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 ZNF699Q32M78 642 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 EDRF1Q3B7T1 1238 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 C1orf220Q5T0J3 134 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 SDHAF4Q5VUM1 108 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 VSTM1Q6UX27 236 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 MYLPFQ96A32 169 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 TRMT2BQ96GJ1 504 aaKnown RBP21.68■■□□□ 1.06
CLK3-225ENST00000569063 CEP295NLQ96MC4 621 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 SLC46A2Q9BY10 475 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 OSBPL6Q9BZF3 934 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 FOXQ1Q9C009 403 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 OBP2AQ9NY56 170 aa21.68■■□□□ 1.06
CLK3-225ENST00000569063 UXTQ9UBK9 157 aaPredicted RBP21.68■■□□□ 1.06
CLK3-225ENST00000569063 CIZ1Q9ULV3 898 aaPredicted RBP21.68■■□□□ 1.06
CLK3-225ENST00000569063 SLC38A8A6NNN8 435 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 ZNF263O14978 683 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 DDX6P26196 483 aaKnown RBP eCLIP21.67■■□□□ 1.06
CLK3-225ENST00000569063 MCCD1P59942 119 aaPredicted RBP21.67■■□□□ 1.06
CLK3-225ENST00000569063 FCHO2Q0JRZ9 810 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 ADAM9Q13443 819 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 COBLL1Q53SF7 1204 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 ZNF667Q5HYK9 610 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 ZNF658Q5TYW1 1059 aaPredicted RBP21.67■■□□□ 1.06
CLK3-225ENST00000569063 INTS8Q75QN2 995 aaKnown RBP21.67■■□□□ 1.06
CLK3-225ENST00000569063 SV2AQ7L0J3 742 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 ELOA2Q8IYF1 753 aaPredicted RBP21.67■■□□□ 1.06
CLK3-225ENST00000569063 SMYD4Q8IYR2 804 aaPredicted RBP21.67■■□□□ 1.06
CLK3-225ENST00000569063 TAF4BQ92750 862 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 PCED1BQ96HM7 432 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 HEBP1Q9NRV9 189 aa21.67■■□□□ 1.06
CLK3-225ENST00000569063 MAGED2Q9UNF1 606 aaPredicted RBP21.67■■□□□ 1.06
CLK3-225ENST00000569063 ARNTLO00327 626 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 CHADO15335 359 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 SMC2O95347 1197 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 DCNP07585 359 aaKnown RBP21.66■■□□□ 1.06
CLK3-225ENST00000569063 PTPN1P18031 435 aaKnown RBP21.66■■□□□ 1.06
CLK3-225ENST00000569063 BDNFP23560 247 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 PSMC2P35998 433 aaKnown RBP21.66■■□□□ 1.06
CLK3-225ENST00000569063 CYP27A1Q02318 531 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 MDH1BQ5I0G3 518 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 TPRG1Q6ZUI0 275 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 SCN4BQ8IWT1 228 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 FAM186BQ8IYM0 893 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 STKLD1Q8NE28 680 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 ATOH1Q92858 354 aaPredicted RBP21.66■■□□□ 1.06
CLK3-225ENST00000569063 SPATA17Q96L03 361 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 LRRC3BQ96PB8 259 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 NELL2Q99435 816 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 DPEP3Q9H4B8 488 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 HOOK1Q9UJC3 728 aaKnown RBP21.66■■□□□ 1.06
CLK3-225ENST00000569063 PCDHA5Q9Y5H7 936 aa21.66■■□□□ 1.06
CLK3-225ENST00000569063 SHISA7A6NL88 538 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 A8MXQ7 604 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 DPYSL4O14531 572 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 PRCPP42785 496 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 CDH8P55286 799 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 ZNF852Q6ZMS4 543 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 GPIHBP1Q8IV16 184 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 YAF2Q8IY57 180 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 CMTM8Q8IZV2 173 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 B3GALNT2Q8NCR0 500 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 SMARCE1Q969G3 411 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 PHOX2BQ99453 314 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 GTPBP4Q9BZE4 634 aaKnown RBP21.65■■□□□ 1.06
CLK3-225ENST00000569063 SMYD3Q9H7B4 428 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 LTB4R2Q9NPC1 389 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 MTF2Q9Y483 593 aaPredicted RBP21.65■■□□□ 1.06
CLK3-225ENST00000569063 COL4A3Q01955 1670 aa21.65■■□□□ 1.06
CLK3-225ENST00000569063 NUP210Q8TEM1 1887 aaPredicted RBP21.64■■□□□ 1.06
CLK3-225ENST00000569063 FAM170BA6NMN3 283 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 PRAMEF12O95522 483 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 ASS1P00966 412 aaKnown RBP21.64■■□□□ 1.05
CLK3-225ENST00000569063 KRT13P13646 458 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 P4HA1P13674 534 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 GLULP15104 373 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 CD72P21854 359 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 GRIK1P39086 918 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 MLLT6P55198 1093 aaPredicted RBP21.64■■□□□ 1.05
CLK3-225ENST00000569063 MON1AQ86VX9 555 aa21.64■■□□□ 1.05
CLK3-225ENST00000569063 MAB21L3Q8N8X9 362 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms