RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SERTAD3Q9UJW9 196 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 ADAM21Q9UKJ8 722 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 STXBP5LQ9Y2K9 1186 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 TMX2Q9Y320 296 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 SMIM22K7EJ46 135 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 ERBB2P04626 1255 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 PRR35P0CG20 571 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 PF4V1P10720 104 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 HSPA6P17066 643 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 NEK2P51955 445 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 LILRA4P59901 499 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 NKX6-1P78426 367 aaPredicted RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 GPSM2P81274 684 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 KRT17Q04695 432 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 HNRNPA0Q13151 305 aaKnown RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 MGAT5BQ3V5L5 792 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 IFIT1BQ5T764 474 aaKnown RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 PRAMEF17Q5VTA0 474 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 PAPD7Q5XG87 772 aaKnown RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 SLC9A4Q6AI14 798 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 RGS7BPQ6MZT1 257 aaPredicted RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 DAAM2Q86T65 1068 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 SLC15A3Q8IY34 581 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.65□□□□□ -1.83
VPS35-207ENST00000568191 DENND1AQ8TEH3 1009 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 XAGE5Q8WWM1 108 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 HPS3Q969F9 1004 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 DAZAP1Q96EP5 407 aaKnown RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 GTPBP4Q9BZE4 634 aaKnown RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 BHMT2Q9H2M3 363 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 CPA4Q9UI42 421 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 PCDHA6Q9UN73 950 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.65□□□□□ -1.83
VPS35-207ENST00000568191 PAXBP1Q9Y5B6 917 aa3.65□□□□□ -1.83
VPS35-207ENST00000568191 A1L4Q6 167 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 CGB1A6NKQ9 187 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 H0YIZ8 118 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 UBE2Q2LH0YL09 131 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 PSMD9O00233 223 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 PPP6CO00743 305 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 BMP15O95972 392 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 TUBB4AP04350 444 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 IL6RP08887 468 aaPredicted RBP3.64□□□□□ -1.83
VPS35-207ENST00000568191 CYP2D6P10635 497 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 ENGP17813 658 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 HDCP19113 662 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 MMP13P45452 471 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 TOB1P50616 345 aaPredicted RBP3.64□□□□□ -1.83
VPS35-207ENST00000568191 PDE6CP51160 858 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 WNT3P56703 355 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 TMEM63BQ5T3F8 832 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 MORN5Q5VZ52 161 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 LMBRD2Q68DH5 695 aaPredicted RBP3.64□□□□□ -1.83
VPS35-207ENST00000568191 TRIM72Q6ZMU5 477 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 OSCP1Q8WVF1 389 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 RPL36ALQ969Q0 106 aaKnown RBP3.64□□□□□ -1.83
VPS35-207ENST00000568191 DUSP22Q9NRW4 184 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 MRPS18AQ9NVS2 196 aaKnown RBP3.64□□□□□ -1.83
VPS35-207ENST00000568191 DLL3Q9NYJ7 618 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 XPR1Q9UBH6 696 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 PNMA8BQ9ULN7 279 aaPredicted RBP3.64□□□□□ -1.83
VPS35-207ENST00000568191 ADAMTS5Q9UNA0 930 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 TBC1D30Q9Y2I9 924 aa3.64□□□□□ -1.83
VPS35-207ENST00000568191 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS35-207ENST00000568191 hCG_2014768A0A024R1R8 64 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 ANKRD62A6NC57 917 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 WIPF3A6NGB9 483 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 PRRT4C9JH25 899 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 TBC1D4O60343 1298 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 DNAJB5O75953 348 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 FESP07332 822 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 PDHA1P08559 390 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 U2AF1L5P0DN76 240 aaPredicted RBP3.63□□□□□ -1.83
VPS35-207ENST00000568191 JUPP14923 745 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 EPHB2P29323 1055 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 LIPAP38571 399 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 CLCN2P51788 898 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 ZNF134P52741 427 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 U2AF1Q01081 240 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS35-207ENST00000568191 PROSER3Q2NL68 480 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 C4orf46Q504U0 113 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 ATAT1Q5SQI0 421 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 DENND2CQ68D51 928 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 ZNF425Q6IV72 752 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 NAPRTQ6XQN6 538 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 ZNF783Q6ZMS7 281 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 MAVSQ7Z434 540 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 C1QL2Q7Z5L3 287 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 NEK8Q86SG6 692 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 GLCCI1Q86VQ1 547 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 RAB11FIP4Q86YS3 637 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 DENND1CQ8IV53 801 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 PNLDC1Q8NA58 520 aaKnown RBP3.63□□□□□ -1.83
VPS35-207ENST00000568191 OR6B3Q8NGW1 331 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 GLG1Q92896 1179 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 R3HDM4Q96D70 268 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 HOOK2Q96ED9 719 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 ZNF778Q96MU6 729 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 ASB2Q96Q27 587 aa3.63□□□□□ -1.83
VPS35-207ENST00000568191 CGRRF1Q99675 332 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms