RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 FRMD5Q7Z6J6 570 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 LRRTM3Q86VH5 581 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 NPAS3Q8IXF0 933 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 PLEKHO2Q8TD55 490 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 TAF4BQ92750 862 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 PSMG2Q969U7 264 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 FUBP3Q96I24 572 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLK3-218ENST00000566926 XPO4Q9C0E2 1151 aaKnown RBP14.34□□□□□ -0.11
CLK3-218ENST00000566926 CRISPLD1Q9H336 500 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 ABI2Q9NYB9 513 aaPredicted RBP14.34□□□□□ -0.11
CLK3-218ENST00000566926 IMPACTQ9P2X3 320 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 DUSP12Q9UNI6 340 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 TRIOO75962 3097 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 GREB1Q4ZG55 1949 aa14.33□□□□□ -0.11
CLK3-218ENST00000566926 AP5Z1O43299 807 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 AKAP3O75969 853 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 HAPLN1P10915 354 aaPredicted RBP14.33□□□□□ -0.12
CLK3-218ENST00000566926 MYL4P12829 197 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 GNL1P36915 607 aaPredicted RBP14.33□□□□□ -0.12
CLK3-218ENST00000566926 RPL10AP62906 217 aaKnown RBP14.33□□□□□ -0.12
CLK3-218ENST00000566926 DLG4P78352 724 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 PRSS36Q5K4E3 855 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 SCARA3Q6AZY7 606 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 SV2AQ7L0J3 742 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 DNAJB7Q7Z6W7 309 aaPredicted RBP14.33□□□□□ -0.12
CLK3-218ENST00000566926 OSTM1Q86WC4 334 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 IRF2BP1Q8IU81 584 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 SPATA2LQ8IUW3 424 aaPredicted RBP14.33□□□□□ -0.12
CLK3-218ENST00000566926 DRC7Q8IY82 874 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 SLC44A3Q8N4M1 653 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 CCDC150Q8NCX0 1101 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 OR6B3Q8NGW1 331 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 ING5Q8WYH8 240 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 PBXIP1Q96AQ6 731 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 IQCDQ96DY2 449 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 MCRS1Q96EZ8 462 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 SYT15Q9BQS2 421 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 IMPG2Q9BZV3 1241 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 NXF1Q9UBU9 619 aaKnown RBP14.33□□□□□ -0.12
CLK3-218ENST00000566926 GTF3C4Q9UKN8 822 aa14.33□□□□□ -0.12
CLK3-218ENST00000566926 NUP210Q8TEM1 1887 aaPredicted RBP14.33□□□□□ -0.12
CLK3-218ENST00000566926 LGALS16A8MUM7 142 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 CSH1P0DML2 217 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 CSH2P0DML3 217 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 SRFP11831 508 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 TRIM21P19474 475 aaKnown RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 ACAT1P24752 427 aaKnown RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 GTF2H1P32780 548 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 MTIF2P46199 727 aaKnown RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 COPB1P53618 953 aaKnown RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 GSDMDP57764 484 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 HTR4Q13639 388 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 NR1I3Q14994 352 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 MAN2A1Q16706 1144 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 SLC5A9Q2M3M2 681 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 CFAP221Q4G0U5 840 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 CCDC40Q4G0X9 1142 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 FKBP15Q5T1M5 1219 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 FAM171BQ6P995 826 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 APTXQ7Z2E3 356 aaKnown RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 SUGP1Q8IWZ8 645 aaKnown RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 HS6ST3Q8IZP7 471 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 TTC9BQ8N6N2 239 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 KBTBD7Q8WVZ9 684 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 GCNAQ96QF7 691 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 TUBGCP2Q9BSJ2 902 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 XYLT2Q9H1B5 865 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 RTN4Q9NQC3 1192 aaKnown RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 ARMCX3Q9UH62 379 aaPredicted RBP14.32□□□□□ -0.12
CLK3-218ENST00000566926 ZMYM5Q9UJ78 669 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 NUMBLQ9Y6R0 609 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 ZDBF2Q9HCK1 2354 aa14.32□□□□□ -0.12
CLK3-218ENST00000566926 OBSL1O75147 1896 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 A0A1W2PQC6 194 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 VNN1O95497 513 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 PTMAP06454 111 aaKnown RBP14.31□□□□□ -0.12
CLK3-218ENST00000566926 PDGFRBP09619 1106 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 CEBPBP17676 345 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 CDC25CP30307 473 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 PIK3CAP42336 1068 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 MAGEA11P43364 429 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 MCCD1P59942 119 aaPredicted RBP14.31□□□□□ -0.12
CLK3-218ENST00000566926 ARHGAP15Q53QZ3 475 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 HFE2Q6ZVN8 426 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 VSTM4Q8IW00 320 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 RSAD2Q8WXG1 361 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 TRIM44Q96DX7 344 aaPredicted RBP14.31□□□□□ -0.12
CLK3-218ENST00000566926 TCEAL4Q96EI5 215 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 ASIC4Q96FT7 647 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 CEP295NLQ96MC4 621 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 PKMYT1Q99640 499 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 PI4K2AQ9BTU6 479 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 DNAI2Q9GZS0 605 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 TMEM8AQ9HCN3 771 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 TMLHEQ9NVH6 421 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 WNT16Q9UBV4 365 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 FBXL21Q9UKT6 434 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 HCN4Q9Y3Q4 1203 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 ITIH6Q6UXX5 1313 aa14.31□□□□□ -0.12
CLK3-218ENST00000566926 ZNF318Q5VUA4 2279 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms