RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 TMC2Q8TDI7 906 aa19.66■□□□□ 0.74
CLN3-214ENST00000565140 LRRC3BQ96PB8 259 aa19.66■□□□□ 0.74
CLN3-214ENST00000565140 BRD9Q9H8M2 597 aa19.66■□□□□ 0.74
CLN3-214ENST00000565140 HEBP1Q9NRV9 189 aa19.66■□□□□ 0.74
CLN3-214ENST00000565140 DLGAP2Q9P1A6 1054 aa19.66■□□□□ 0.74
CLN3-214ENST00000565140 MYH10P35580 1976 aa19.66■□□□□ 0.74
CLN3-214ENST00000565140 KANSL1LA0AUZ9 987 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 SHISA7A6NL88 538 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 GLULP15104 373 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 NR2F2P24468 414 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 CDC25CP30307 473 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 NLRP12P59046 1061 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 RPL10AP62906 217 aaKnown RBP19.65■□□□□ 0.74
CLN3-214ENST00000565140 PRKCQQ04759 706 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 FAM160A1Q05DH4 1040 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 NCOA4Q13772 614 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 NFIL3Q16649 462 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 ZCWPW2Q504Y3 356 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 ARHGAP15Q53QZ3 475 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 ALYREFQ86V81 257 aaKnown RBP19.65■□□□□ 0.74
CLN3-214ENST00000565140 SCN4BQ8IWT1 228 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 PJA1Q8NG27 643 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 OR6B3Q8NGW1 331 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 ERCC4Q92889 916 aaPredicted RBP19.65■□□□□ 0.74
CLN3-214ENST00000565140 MYLPFQ96A32 169 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 SYAP1Q96A49 352 aaPredicted RBP19.65■□□□□ 0.74
CLN3-214ENST00000565140 FUBP3Q96I24 572 aaKnown RBP eCLIP19.65■□□□□ 0.74
CLN3-214ENST00000565140 SLC46A2Q9BY10 475 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 SNX25Q9H3E2 840 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 TASP1Q9H6P5 420 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 VRTNQ9H8Y1 702 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 MAGEC2Q9UBF1 373 aaPredicted RBP19.65■□□□□ 0.74
CLN3-214ENST00000565140 MAGED2Q9UNF1 606 aaPredicted RBP19.65■□□□□ 0.74
CLN3-214ENST00000565140 FRMD4BQ9Y2L6 1034 aa19.65■□□□□ 0.74
CLN3-214ENST00000565140 SLC38A8A6NNN8 435 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 AKAP3O75969 853 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 FAM163BP0C2L3 166 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 CSH1P0DML2 217 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 CSH2P0DML3 217 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 MAGEA11P43364 429 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 CDH8P55286 799 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 ZACNQ401N2 412 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 C4orf50Q6ZRC1 276 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 TPRG1Q6ZUI0 275 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 SV2AQ7L0J3 742 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 MYCBPAPQ8TBZ2 947 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 DEPDC1BQ8WUY9 529 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 ATOH1Q92858 354 aaPredicted RBP19.64■□□□□ 0.73
CLN3-214ENST00000565140 DNASE1L2Q92874 299 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 E2F7Q96AV8 911 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 PCED1BQ96HM7 432 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 SMG9Q9H0W8 520 aaKnown RBP19.64■□□□□ 0.73
CLN3-214ENST00000565140 DPEP3Q9H4B8 488 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 SMYD3Q9H7B4 428 aa19.64■□□□□ 0.73
CLN3-214ENST00000565140 PATJQ8NI35 1801 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 MAPK13O15264 365 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 NOL4O94818 638 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 PRAMEF12O95522 483 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 BDNFP23560 247 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 WEE1P30291 646 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 RAP1GAPP47736 663 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 VAMP7P51809 220 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 CYP27A1Q02318 531 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 ADAM9Q13443 819 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 ZNF699Q32M78 642 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 MDH1BQ5I0G3 518 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 IRF7Q92985 503 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 CCDC34Q96HJ3 373 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 GCNAQ96QF7 691 aa19.63■□□□□ 0.73
CLN3-214ENST00000565140 FAM170BA6NMN3 283 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 ARNTLO00327 626 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 IKBKBO14920 756 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 ZNF263O14978 683 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 TADA3O75528 432 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 PTPN1P18031 435 aaKnown RBP19.62■□□□□ 0.73
CLN3-214ENST00000565140 PRCPP42785 496 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 MRE11P49959 708 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 FCHO2Q0JRZ9 810 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 UBXN2BQ14CS0 331 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 MAPRE1Q15691 268 aaKnown RBP19.62■□□□□ 0.73
CLN3-214ENST00000565140 ZNF667Q5HYK9 610 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 TXNDC8Q6A555 127 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 MAB21L3Q8N8X9 362 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 SPATA20Q8TB22 786 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 EEF2KMTQ96G04 330 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 TRMT2BQ96GJ1 504 aaKnown RBP19.62■□□□□ 0.73
CLN3-214ENST00000565140 MYRFLQ96LU7 910 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 SDCBP2Q9H190 292 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 IRF2BPLQ9H1B7 796 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 TRPV5Q9NQA5 729 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 PCDHA5Q9Y5H7 936 aa19.62■□□□□ 0.73
CLN3-214ENST00000565140 RIF1Q5UIP0 2472 aaKnown RBP19.61■□□□□ 0.73
CLN3-214ENST00000565140 A8MXQ7 604 aa19.61■□□□□ 0.73
CLN3-214ENST00000565140 GADD45BO75293 160 aaPredicted RBP19.61■□□□□ 0.73
CLN3-214ENST00000565140 TRIM49P0CI25 452 aa19.61■□□□□ 0.73
CLN3-214ENST00000565140 TRIM49CP0CI26 452 aa19.61■□□□□ 0.73
CLN3-214ENST00000565140 RPL13P26373 211 aaKnown RBP19.61■□□□□ 0.73
CLN3-214ENST00000565140 TARSP26639 723 aaKnown RBP19.61■□□□□ 0.73
CLN3-214ENST00000565140 PSMC2P35998 433 aaKnown RBP19.61■□□□□ 0.73
CLN3-214ENST00000565140 GRIK1P39086 918 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms