RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 LRCH4O75427 683 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 TOM1L1O75674 476 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 NQO1P15559 274 aaKnown RBP14.18□□□□□ -0.14
CLK3-215ENST00000564353 ASPAP45381 313 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 VCPP55072 806 aaKnown RBP14.18□□□□□ -0.14
CLK3-215ENST00000564353 COPS2P61201 443 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 CAV1Q03135 178 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 STAT4Q14765 748 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 MAPK6Q16659 721 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 SWT1Q5T5J6 900 aaKnown RBP14.18□□□□□ -0.14
CLK3-215ENST00000564353 TRIM72Q6ZMU5 477 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 TRABD2AQ86V40 505 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 CFAP57Q96MR6 1250 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 ACO2Q99798 780 aaKnown RBP14.18□□□□□ -0.14
CLK3-215ENST00000564353 MRPL4Q9BYD3 311 aaKnown RBP14.18□□□□□ -0.14
CLK3-215ENST00000564353 SDCBP2Q9H190 292 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 ETNK1Q9HBU6 452 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 GINM1Q9NU53 330 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 GPATCH2LQ9NWQ4 482 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 HAO1Q9UJM8 370 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 PHTF1Q9UMS5 762 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 ADAMTS5Q9UNA0 930 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 CHMP2BQ9UQN3 213 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 GINS2Q9Y248 185 aa14.18□□□□□ -0.14
CLK3-215ENST00000564353 ERBB2P04626 1255 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 ZNF132P52740 706 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 VGLL4Q14135 290 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 RNASEH2BQ5TBB1 312 aaKnown RBP14.17□□□□□ -0.14
CLK3-215ENST00000564353 C3orf62Q6ZUJ4 267 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 NETO2Q8NC67 525 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 SMC6Q96SB8 1091 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 TRIM56Q9BRZ2 755 aaKnown RBP14.17□□□□□ -0.14
CLK3-215ENST00000564353 MYLK2Q9H1R3 596 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 SLC24A3Q9HC58 644 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 PDGFCQ9NRA1 345 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 PSME4Q14997 1843 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 LOXHD1Q8IVV2 1947 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 C2orf71A6NGG8 1288 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 CBX6O95503 412 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 ITGB3P05106 788 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 ADRA1DP25100 572 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 RGS7P49802 495 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 ATP11AP98196 1134 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 IL9RQ01113 521 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 OASLQ15646 514 aaKnown RBP14.17□□□□□ -0.14
CLK3-215ENST00000564353 HIF1AQ16665 826 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 C15orf59Q2T9L4 293 aaPredicted RBP14.17□□□□□ -0.14
CLK3-215ENST00000564353 C1orf228Q6PIY5 440 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 KCTD6Q8NC69 237 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 PYROXD1Q8WU10 500 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 RSAD2Q8WXG1 361 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 OTUD5Q96G74 571 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 MAGEB18Q96M61 343 aa14.17□□□□□ -0.14
CLK3-215ENST00000564353 WDR83Q9BRX9 315 aaKnown RBP14.17□□□□□ -0.14
CLK3-215ENST00000564353 TMEM63AO94886 807 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 CALB1P05937 261 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 HOXC6P09630 235 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 YY1P25490 414 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 LVRNQ6Q4G3 990 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 VSIG1Q86XK7 387 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 FBXO36Q8NEA4 188 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 NLGN2Q8NFZ4 835 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 FBF1Q8TES7 1133 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 N4BP2L2Q92802 583 aaPredicted RBP14.16□□□□□ -0.14
CLK3-215ENST00000564353 VPS33BQ9H267 617 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 NPHS2Q9NP85 383 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 NR2E3Q9Y5X4 410 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 CLUHO75153 1309 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 FAM155BO75949 473 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 ATG7O95352 703 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 RPL22P35268 128 aaKnown RBP14.16□□□□□ -0.14
CLK3-215ENST00000564353 ERFP50548 548 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 SCYL2Q6P3W7 929 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 WDR49Q8IV35 697 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 IGDCC3Q8IVU1 814 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 C12orf29Q8N999 325 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 CPT1BQ92523 772 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 LPIN3Q9BQK8 851 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 XYLT2Q9H1B5 865 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 SLC17A7Q9P2U7 560 aa14.16□□□□□ -0.14
CLK3-215ENST00000564353 MYH9P35579 1960 aaKnown RBP14.16□□□□□ -0.14
CLK3-215ENST00000564353 TCRBV5S1A1TA0A578 114 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 M0QYV0 167 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 OGTO15294 1046 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 MAFO75444 373 aaPredicted RBP14.15□□□□□ -0.14
CLK3-215ENST00000564353 ASMTLO95671 621 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 MCCD1P59942 119 aaPredicted RBP14.15□□□□□ -0.14
CLK3-215ENST00000564353 SARNPP82979 210 aaKnown RBP14.15□□□□□ -0.14
CLK3-215ENST00000564353 MTFR1Q15390 333 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 TARBP2Q15633 366 aaKnown RBP14.15□□□□□ -0.14
CLK3-215ENST00000564353 SGSM1Q2NKQ1 1148 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 ATF7IP2Q5U623 682 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 HHATQ5VTY9 493 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 CENPUQ71F23 418 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 BBOF1Q8ND07 529 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 GIMAP7Q8NHV1 300 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 SEPT1Q8WYJ6 367 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 VCPIP1Q96JH7 1222 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 CLMNQ96JQ2 1002 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 NIFKQ9BYG3 293 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms