RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ELAC1Q9H777 363 aaKnown RBP22.49■■□□□ 1.19
CLN3-209ENST00000561689 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.48■■□□□ 1.19
CLN3-209ENST00000561689 CEP104O60308 925 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 FAM163BP0C2L3 166 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 PAFAH1B1P43034 410 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 MARCKSL1P49006 195 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 CFAP221Q4G0U5 840 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 KIAA0319Q5VV43 1072 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 DAB2IPQ5VWQ8 1189 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 PMF1Q6P1K2 205 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 DCUN1D2Q6PH85 259 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 DCLRE1AQ6PJP8 1040 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 XYLT1Q86Y38 959 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 ABI1Q8IZP0 508 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 NOA1Q8NC60 698 aaKnown RBP22.48■■□□□ 1.19
CLN3-209ENST00000561689 MSANTD4Q8NCY6 345 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 C3orf20Q8ND61 904 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 PBKQ96KB5 322 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 DNAI2Q9GZS0 605 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 EPC1Q9H2F5 836 aa22.48■■□□□ 1.19
CLN3-209ENST00000561689 TMEM191CA6NGB0 347 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 PTPN1P18031 435 aaKnown RBP22.47■■□□□ 1.19
CLN3-209ENST00000561689 PDE4CQ08493 712 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 DSC1Q08554 894 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 PPP1R15BQ5SWA1 713 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 DCAF12L1Q5VU92 463 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 CD101Q93033 1021 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 KANSL3Q9P2N6 904 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 DNAJB4Q9UDY4 337 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 LRFN2Q9ULH4 789 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 PROSCO94903 275 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 CLTBP09497 229 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 ODC1P11926 461 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 TKTP29401 623 aaKnown RBP22.47■■□□□ 1.19
CLN3-209ENST00000561689 LHX1P48742 406 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 C2orf54Q08AI8 447 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 COLGALT2Q8IYK4 626 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 TET1Q8NFU7 2136 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 RSPH1Q8WYR4 309 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 SELENOOQ9BVL4 669 aa22.47■■□□□ 1.19
CLN3-209ENST00000561689 MIF4GDA9UHW6 222 aaKnown RBP22.46■■□□□ 1.19
CLN3-209ENST00000561689 E5RJQ4 531 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 CES2O00748 559 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 PARNO95453 639 aaKnown RBP22.46■■□□□ 1.19
CLN3-209ENST00000561689 GABRB2P47870 512 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 OR1G1P47890 313 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 MDH1BQ5I0G3 518 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 UBL4BQ8N7F7 174 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 ANKRD52Q8NB46 1076 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 IPO4Q8TEX9 1081 aaKnown RBP22.46■■□□□ 1.19
CLN3-209ENST00000561689 SLC35F5Q8WV83 523 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 FAM193BQ96PV7 902 aaPredicted RBP22.46■■□□□ 1.19
CLN3-209ENST00000561689 RNF14Q9UBS8 474 aa22.46■■□□□ 1.19
CLN3-209ENST00000561689 CLDN5O00501 218 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 KRT3P12035 628 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 OGDHQ02218 1023 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 ZNF211Q13398 564 aaPredicted RBP22.45■■□□□ 1.18
CLN3-209ENST00000561689 ZNF268Q14587 947 aaPredicted RBP22.45■■□□□ 1.18
CLN3-209ENST00000561689 SPATA4Q8NEY3 305 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 ANKRD7Q92527 254 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 CASD1Q96PB1 797 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 CRTAC1Q9NQ79 661 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 PCDH10Q9P2E7 1040 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 PRG3Q9Y2Y8 225 aaPredicted RBP22.45■■□□□ 1.18
CLN3-209ENST00000561689 CTNNA1P35221 906 aaKnown RBP22.45■■□□□ 1.18
CLN3-209ENST00000561689 RFC1P35251 1148 aaPredicted RBP22.45■■□□□ 1.18
CLN3-209ENST00000561689 PEX5P50542 639 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 FUKQ8N0W3 1084 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 JOSD2Q8TAC2 188 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 SYT15Q9BQS2 421 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 WDR35Q9P2L0 1181 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 IP6K2Q9UHH9 426 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 USTQ9Y2C2 406 aa22.45■■□□□ 1.18
CLN3-209ENST00000561689 KIAA0100Q14667 2235 aaKnown RBP22.44■■□□□ 1.18
CLN3-209ENST00000561689 SCN5AQ14524 2016 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 SIGLEC16A6NMB1 481 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 M0QZQ0 153 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 SLC1A1P43005 524 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 BCAT1P54687 386 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 ZNF252P-AS1Q0IIN9 211 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 BST2Q10589 180 aaKnown RBP22.44■■□□□ 1.18
CLN3-209ENST00000561689 ZNF572Q7Z3I7 529 aaPredicted RBP22.44■■□□□ 1.18
CLN3-209ENST00000561689 METTL23Q86XA0 190 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 CRIPAKQ8N1N5 446 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 RPGRIP1Q96KN7 1286 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 HNRNPABQ99729 332 aaKnown RBP22.44■■□□□ 1.18
CLN3-209ENST00000561689 RTP3Q9BQQ7 232 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 TMEM106CQ9BVX2 250 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 METTL5Q9NRN9 209 aaKnown RBP22.44■■□□□ 1.18
CLN3-209ENST00000561689 PCDHA3Q9Y5H8 950 aa22.44■■□□□ 1.18
CLN3-209ENST00000561689 MYBPHLA2RUH7 354 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 GABBR2O75899 941 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 SETSIPP0DME0 302 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 TAP1Q03518 808 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 OR6B2Q6IFH4 312 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.43■■□□□ 1.18
CLN3-209ENST00000561689 FAM183BPQ6ZVS7 135 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.43■■□□□ 1.18
CLN3-209ENST00000561689 VWCEQ96DN2 955 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 MCRS1Q96EZ8 462 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms