RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FAM171BQ6P995 826 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 DPH6Q7L8W6 267 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 HS2ST1Q7LGA3 356 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 LIMS2Q7Z4I7 341 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 MON1AQ86VX9 555 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 KIAA2013Q8IYS2 634 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 LEO1Q8WVC0 666 aaPredicted RBP10.95□□□□□ -0.66
LDLR-214ENST00000560628 KBTBD7Q8WVZ9 684 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 MRPS31Q92665 395 aaKnown RBP10.95□□□□□ -0.66
LDLR-214ENST00000560628 USP13Q92995 863 aaPredicted RBP10.95□□□□□ -0.66
LDLR-214ENST00000560628 PAGE5Q96GU1 130 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 CYP2S1Q96SQ9 504 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 SYT15Q9BQS2 421 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 MRPL45Q9BRJ2 306 aaKnown RBP10.95□□□□□ -0.66
LDLR-214ENST00000560628 ABCB6Q9NP58 842 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 PRMT8Q9NR22 394 aaPredicted RBP10.95□□□□□ -0.66
LDLR-214ENST00000560628 MAGEC2Q9UBF1 373 aaPredicted RBP10.95□□□□□ -0.66
LDLR-214ENST00000560628 CDH9Q9ULB4 789 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 PCDHGA2Q9Y5H1 932 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 TCHHQ07283 1943 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 TSC2P49815 1807 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 A0A1B0GVL5 298 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 EXOC3O60645 756 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 NOL4O94818 638 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 SLFN14P0C7P3 912 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 BDNFP23560 247 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 GNL1P36915 607 aaPredicted RBP10.94□□□□□ -0.66
LDLR-214ENST00000560628 CXCL12P48061 93 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 CASP4P49662 377 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 MLLT6P55198 1093 aaPredicted RBP10.94□□□□□ -0.66
LDLR-214ENST00000560628 MYL6P60660 151 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 SNRPFP62306 86 aaKnown RBP10.94□□□□□ -0.66
LDLR-214ENST00000560628 PLCB2Q00722 1185 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 SATB1Q01826 763 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 CYP27A1Q02318 531 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 KNOP1Q1ED39 458 aaKnown RBP10.94□□□□□ -0.66
LDLR-214ENST00000560628 ITPRIPL2Q3MIP1 535 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 TRIM68Q6AZZ1 485 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 Q6ZS52 159 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 RALGPS2Q86X27 583 aaPredicted RBP10.94□□□□□ -0.66
LDLR-214ENST00000560628 ZBTB44Q8NCP5 570 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 OR6B3Q8NGW1 331 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 RIN3Q8TB24 985 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 SPATA18Q8TC71 538 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 RUBCNQ92622 972 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 NELL1Q92832 810 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 MYLPFQ96A32 169 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 ELMO3Q96BJ8 720 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 CGRRF1Q99675 332 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 GZF1Q9H116 711 aaPredicted RBP10.94□□□□□ -0.66
LDLR-214ENST00000560628 SNX25Q9H3E2 840 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 EBF3Q9H4W6 596 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 TRPC7Q9HCX4 862 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 CRTAC1Q9NQ79 661 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 TDP1Q9NUW8 608 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 NXF1Q9UBU9 619 aaKnown RBP10.94□□□□□ -0.66
LDLR-214ENST00000560628 NME7Q9Y5B8 376 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 TICRRQ7Z2Z1 1910 aa10.94□□□□□ -0.66
LDLR-214ENST00000560628 UBE4BO95155 1302 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 EP300Q09472 2414 aaPredicted RBP10.93□□□□□ -0.66
LDLR-214ENST00000560628 OTOL1A6NHN0 477 aaPredicted RBP10.93□□□□□ -0.66
LDLR-214ENST00000560628 ACTN4O43707 911 aaKnown RBP10.93□□□□□ -0.66
LDLR-214ENST00000560628 KLRC4O43908 158 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 PHACTR2O75167 634 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 TADA3O75528 432 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 ARSAP15289 507 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 WARSP23381 471 aaKnown RBP10.93□□□□□ -0.66
LDLR-214ENST00000560628 DDX6P26196 483 aaKnown RBP eCLIP10.93□□□□□ -0.661e-8■■□□□ 13.2
LDLR-214ENST00000560628 HOXC13P31276 330 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 GRIK1P39086 918 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 ID4P47928 161 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 CCR3P51677 355 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 STK4Q13043 487 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 TRPC3Q13507 836 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 RUNX3Q13761 415 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 LRRC32Q14392 662 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 BMT2Q1RMZ1 405 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 WDR72Q3MJ13 1102 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 KMT5BQ4FZB7 885 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 CFAP221Q4G0U5 840 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 MDH1BQ5I0G3 518 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 CC2D1AQ6P1N0 951 aaPredicted RBP10.93□□□□□ -0.66
LDLR-214ENST00000560628 MAMSTRQ6ZN01 415 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 C4orf50Q6ZRC1 276 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 SPEM1Q8N4L4 309 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 ARL14EPQ8N8R7 260 aaPredicted RBP10.93□□□□□ -0.66
LDLR-214ENST00000560628 PLEKHO2Q8TD55 490 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 MSANTD3Q96H12 275 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 FUBP3Q96I24 572 aaKnown RBP eCLIP10.93□□□□□ -0.662e-7■■■■■ 32.3
LDLR-214ENST00000560628 MYRFLQ96LU7 910 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 SLC22A12Q96S37 553 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 FAM83CQ9BQN1 747 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 HPS4Q9NQG7 708 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 EXOC1Q9NV70 894 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 C2orf42Q9NWW7 574 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 NCDNQ9UBB6 729 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 UXTQ9UBK9 157 aaPredicted RBP10.93□□□□□ -0.66
LDLR-214ENST00000560628 ZMYM5Q9UJ78 669 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 ZDHHC9Q9Y397 364 aa10.93□□□□□ -0.66
LDLR-214ENST00000560628 GTF3C3Q9Y5Q9 886 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms