RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 CASP5P51878 434 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 TFAMQ00059 246 aaKnown RBP14.08□□□□□ -0.16
TPM1-220ENST00000559556 ALCAMQ13740 583 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 INTS6LQ5JSJ4 861 aaKnown RBP14.08□□□□□ -0.16
TPM1-220ENST00000559556 TXNDC8Q6A555 127 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 TRIM68Q6AZZ1 485 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 MON1AQ86VX9 555 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 STKLD1Q8NE28 680 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 MRPS31Q92665 395 aaKnown RBP14.08□□□□□ -0.16
TPM1-220ENST00000559556 SAAL1Q96ER3 474 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 MYRFLQ96LU7 910 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 ACCSQ96QU6 501 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 PI4K2AQ9BTU6 479 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 TMEM206Q9H813 350 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 UPF2Q9HAU5 1272 aaKnown RBP14.08□□□□□ -0.16
TPM1-220ENST00000559556 GDAP2Q9NXN4 497 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 RBAKQ9NYW8 714 aaPredicted RBP14.08□□□□□ -0.16
TPM1-220ENST00000559556 CCDC39Q9UFE4 941 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 ITGA11Q9UKX5 1188 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 AGAP1Q9UPQ3 857 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 SRPRBQ9Y5M8 271 aaKnown RBP14.08□□□□□ -0.16
TPM1-220ENST00000559556 CLIC4Q9Y696 253 aa14.08□□□□□ -0.16
TPM1-220ENST00000559556 NBEAQ8NFP9 2946 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 FRMD3A2A2Y4 597 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 VPS37CA5D8V6 355 aaPredicted RBP14.07□□□□□ -0.16
TPM1-220ENST00000559556 GDF9O60383 454 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 HUS1O60921 280 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 ATG13O75143 517 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 GCNT3O95395 438 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 ARSAP15289 507 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 TXLNAP40222 546 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 RAP1GAPP47736 663 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 LIMK1P53667 647 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 RPL10AP62906 217 aaKnown RBP14.07□□□□□ -0.16
TPM1-220ENST00000559556 MYL7Q01449 175 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 GRSF1Q12849 480 aaKnown RBP eCLIP14.07□□□□□ -0.16
TPM1-220ENST00000559556 USP4Q13107 963 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 PDGFRLQ15198 375 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 ZNF77Q15935 545 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 CFAP221Q4G0U5 840 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 PPM1JQ5JR12 505 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 SV2BQ7L1I2 683 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 CACTINQ8WUQ7 758 aaKnown RBP14.07□□□□□ -0.16
TPM1-220ENST00000559556 LOXL4Q96JB6 756 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 DDX43Q9NXZ2 648 aaKnown RBP14.07□□□□□ -0.16
TPM1-220ENST00000559556 TBC1D7Q9P0N9 293 aa14.07□□□□□ -0.16
TPM1-220ENST00000559556 MAGED2Q9UNF1 606 aaPredicted RBP14.07□□□□□ -0.16
TPM1-220ENST00000559556 PKD1L2Q7Z442 2459 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 SPEGQ15772 3267 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 GABRDO14764 452 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 RNF40O75150 1001 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 RPP40O75818 363 aaKnown RBP14.06□□□□□ -0.16
TPM1-220ENST00000559556 AKAP3O75969 853 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 EPN2O95208 641 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 EGFP01133 1207 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 PDCP20941 246 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 DRD1P21728 446 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 ACAT1P24752 427 aaKnown RBP14.06□□□□□ -0.16
TPM1-220ENST00000559556 CYP2F1P24903 491 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 AMPD2Q01433 879 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 FAM160A1Q05DH4 1040 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 CUL4AQ13619 759 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 MTF1Q14872 753 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 DDR2Q16832 855 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 SDHAF4Q5VUM1 108 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 RRAGBQ5VZM2 374 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 CC2D1AQ6P1N0 951 aaPredicted RBP14.06□□□□□ -0.16
TPM1-220ENST00000559556 CACNA2D4Q7Z3S7 1137 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 OSTM1Q86WC4 334 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 TOP6BLQ8N6T0 577 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 FUBP3Q96I24 572 aaKnown RBP eCLIP14.06□□□□□ -0.16
TPM1-220ENST00000559556 FAM84AQ96KN4 292 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 CLIC6Q96NY7 704 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 SIX4Q9UIU6 781 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 PCDHB13Q9Y5F0 798 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 MORC2Q9Y6X9 1032 aaPredicted RBP14.06□□□□□ -0.16
TPM1-220ENST00000559556 KNL1Q8NG31 2342 aa14.06□□□□□ -0.16
TPM1-220ENST00000559556 CACNA1GO43497 2377 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 PCSK1P29120 753 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 GJA4P35212 333 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 LHX1P48742 406 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 PXNP49023 591 aaPredicted RBP14.05□□□□□ -0.16
TPM1-220ENST00000559556 RESTQ13127 1097 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 CCDC142Q17RM4 750 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 FBXO43Q4G163 708 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 SCARA3Q6AZY7 606 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 CCDC73Q6ZRK6 1079 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 LIMS2Q7Z4I7 341 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 KBTBD6Q86V97 674 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 ADGRF2Q8IZF7 708 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 SYCP3Q8IZU3 236 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 CPA6Q8N4T0 437 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 CAMKK1Q8N5S9 505 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 CSGALNACT2Q8N6G5 542 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 DDX1Q92499 740 aaKnown RBP14.05□□□□□ -0.16
TPM1-220ENST00000559556 ZC3H10Q96K80 434 aaKnown RBP14.05□□□□□ -0.16
TPM1-220ENST00000559556 SLC22A12Q96S37 553 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 CBWD1Q9BRT8 395 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 FGFBP2Q9BYJ0 223 aa14.05□□□□□ -0.16
TPM1-220ENST00000559556 MTMR12Q9C0I1 747 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms