RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ATXN2Q99700 1313 aaKnown RBP10.08□□□□□ -0.8
SYNE2-224ENST00000557024 H0Y626 953 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 TRIM16O95361 564 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 CXCL8P10145 99 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 PDIA4P13667 645 aaKnown RBP10.08□□□□□ -0.8
SYNE2-224ENST00000557024 RPA1P27694 616 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 MCM7P33993 719 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 RDXP35241 583 aaKnown RBP10.08□□□□□ -0.8
SYNE2-224ENST00000557024 GUCY2FP51841 1108 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 SEC13P55735 322 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 SCAPQ12770 1279 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 SEMA3BQ13214 749 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 GNL2Q13823 731 aaKnown RBP10.08□□□□□ -0.8
SYNE2-224ENST00000557024 PDGFRLQ15198 375 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 SLC39A12Q504Y0 691 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 TMEM150AQ86TG1 271 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 CPA6Q8N4T0 437 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 MDGA1Q8NFP4 955 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 OR10T2Q8NGX3 314 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 RLN3Q8WXF3 142 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 CD101Q93033 1021 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 EXOC4Q96A65 974 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 C8orf76Q96K31 380 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 BBC3Q96PG8 261 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-224ENST00000557024 BHMT2Q9H2M3 363 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 ECT2Q9H8V3 914 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 TMEM74BQ9NUR3 256 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 TDP1Q9NUW8 608 aa10.08□□□□□ -0.8
SYNE2-224ENST00000557024 LAMA5O15230 3695 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 VPS37CA5D8V6 355 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 FAM221BA6H8Z2 402 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 ANTXRLA6NF34 631 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 EIF4E1BA6NMX2 242 aaKnown RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 BTBD18B2RXH4 712 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 PPEF2O14830 753 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 CFIP05156 583 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 TYMPP19971 482 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 LRPAP1P30533 357 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 PTGER3P43115 390 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 TUFMP49411 452 aaKnown RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 NLRP12P59046 1061 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 DMP1Q13316 513 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 NOLC1Q14978 699 aaKnown RBP eCLIP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 SAFBQ15424 915 aaKnown RBP eCLIP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 ECM1Q16610 540 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 C2orf27AQ580R0 203 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 TXNDC8Q6A555 127 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 LPCAT2Q7L5N7 544 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 RAB44Q7Z6P3 723 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 RASSF3Q86WH2 238 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 SYT12Q8IV01 421 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 TMEFF1Q8IYR6 380 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 DAW1Q8N136 415 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 HDDC3Q8N4P3 179 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 CCDC33Q8N5R6 958 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 STKLD1Q8NE28 680 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 ERMNQ8TAM6 284 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 USP33Q8TEY7 942 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 CNOT6LQ96LI5 555 aaKnown RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 GTPBP2Q9BX10 602 aaKnown RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 KIF9Q9HAQ2 790 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 KMT5AQ9NQR1 393 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 ARHGAP28Q9P2N2 729 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 HSFX1Q9UBD0 423 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 MBD1Q9UIS9 605 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-224ENST00000557024 ZMYM5Q9UJ78 669 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 VPS9D1Q9Y2B5 631 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 WNT6Q9Y6F9 365 aa10.07□□□□□ -0.8
SYNE2-224ENST00000557024 EML5Q05BV3 1969 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 HELZ2Q9BYK8 2649 aaKnown RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 CACNA1EQ15878 2313 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 UPK3BL1B0FP48 263 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 UPK3BL2E5RIL1 263 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 TNFRSF10BO14763 440 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 SLC16A4O15374 487 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 HIP1RO75146 1068 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 TOM1L1O75674 476 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 ODC1P11926 461 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 FDPSP14324 419 aaKnown RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 CCT6AP40227 531 aaKnown RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 ATXN3P54252 364 aaPredicted RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 MTF1Q14872 753 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 ZBTB6Q15916 424 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 ZNF423Q2M1K9 1284 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 MCTP1Q6DN14 999 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 DIS3L2Q8IYB7 885 aaKnown RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 FRMD1Q8N878 549 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 HNRNPLLQ8WVV9 542 aaKnown RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 LRIG1Q96JA1 1093 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 SENP8Q96LD8 212 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 FNBP1Q96RU3 617 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 DUS2Q9NX74 493 aaKnown RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 UBQLN1Q9UMX0 589 aaKnown RBP10.06□□□□□ -0.8
SYNE2-224ENST00000557024 RAXQ9Y2V3 346 aa10.06□□□□□ -0.8
SYNE2-224ENST00000557024 NUP210Q8TEM1 1887 aaPredicted RBP10.05□□□□□ -0.8
SYNE2-224ENST00000557024 TTC26A0AVF1 554 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 STX6O43752 255 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 F11P03951 625 aa10.05□□□□□ -0.8
SYNE2-224ENST00000557024 CLTAP09496 248 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms