RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RP9Q8TA86 221 aaKnown RBP4.43□□□□□ -1.7
SCFD1-218ENST00000556256 COG1Q8WTW3 980 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 KAT5Q92993 513 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 FOXP1Q9H334 677 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-218ENST00000556256 WASHC2AQ641Q2 1341 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 TRIM75PA6NK02 468 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 EXOC3O60645 756 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 GNAI3P08754 354 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 CHRM5P08912 532 aaPredicted RBP4.42□□□□□ -1.7
SCFD1-218ENST00000556256 HOXD9P28356 352 aaPredicted RBP4.42□□□□□ -1.7
SCFD1-218ENST00000556256 HTR6P50406 440 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 SLC16A1P53985 500 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 GNAI1P63096 354 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 HYAL1Q12794 435 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 CERKLQ49MI3 558 aaPredicted RBP4.42□□□□□ -1.7
SCFD1-218ENST00000556256 MEX3CQ5U5Q3 659 aaKnown RBP4.42□□□□□ -1.7
SCFD1-218ENST00000556256 KRTAP5-1Q6L8H4 278 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 KIRREL2Q6UWL6 708 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 Q6ZTC4 211 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 SIK2Q9H0K1 926 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 MAN1C1Q9NR34 630 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 GNL3LQ9NVN8 582 aaKnown RBP4.42□□□□□ -1.7
SCFD1-218ENST00000556256 PROCRQ9UNN8 238 aa4.42□□□□□ -1.7
SCFD1-218ENST00000556256 CCDC154A6NI56 674 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 FAM90A8PA6NJQ4 464 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 ERVV-2B6SEH9 535 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 GTPBP1O00178 669 aaKnown RBP4.41□□□□□ -1.7
SCFD1-218ENST00000556256 GPR39O43194 453 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 SMAD6O43541 496 aaKnown RBP4.41□□□□□ -1.7
SCFD1-218ENST00000556256 USP1O94782 785 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 PDE8BO95263 885 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 FAM90A13PP0C7W8 464 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 FAM90A24PP0C7X0 464 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 C5AR1P21730 350 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 KLF1Q13351 362 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-218ENST00000556256 SFRP4Q6FHJ7 346 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-218ENST00000556256 PPP4R3AQ6IN85 833 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 SLC4A10Q6U841 1118 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 ZNF813Q6ZN06 617 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 Q6ZWC4 215 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 TERB1Q8NA31 727 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 JADE3Q92613 823 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 THAP7Q9BT49 309 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-218ENST00000556256 HIPK2Q9H2X6 1198 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 SLAMF7Q9NQ25 335 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 SERTAD3Q9UJW9 196 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 SSX2IPQ9Y2D8 614 aa4.41□□□□□ -1.7
SCFD1-218ENST00000556256 A1L4Q6 167 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 PRSS44E7EML9 344 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 K7ESF4 209 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 ENPP3O14638 875 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 DSCR3O14972 297 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 CRYABP02511 175 aaKnown RBP4.4□□□□□ -1.71
SCFD1-218ENST00000556256 RARBP10826 455 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 GPSM2P81274 684 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 ZNF268Q14587 947 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-218ENST00000556256 KIF22Q14807 665 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 TBC1D25Q3MII6 688 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 USP37Q86T82 979 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 WDR66Q8TBY9 1149 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 NSUN6Q8TEA1 469 aaKnown RBP4.4□□□□□ -1.71
SCFD1-218ENST00000556256 GLG1Q92896 1179 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 CUL5Q93034 780 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 SNX18Q96RF0 628 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 CTAGE1Q96RT6 745 aa4.4□□□□□ -1.71
SCFD1-218ENST00000556256 TTC3P53804 2025 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 LOC105371045A0A1W2PR82 267 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 TCRBV5S1A1TA0A578 114 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 UBE2Q2LH0YL09 131 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 SMARCA1P28370 1054 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 GHRHRQ02643 423 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 NPY5RQ15761 445 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 UBAP2Q5T6F2 1119 aaKnown RBP4.39□□□□□ -1.71
SCFD1-218ENST00000556256 PIP4P1Q86T03 277 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 SPATS2Q86XZ4 545 aaKnown RBP4.39□□□□□ -1.71
SCFD1-218ENST00000556256 ABHD11Q8NFV4 315 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 CHAC2Q8WUX2 184 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 XAGE5Q8WWM1 108 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 ATG4AQ8WYN0 398 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 R3HDM4Q96D70 268 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 LENG8Q96PV6 779 aaPredicted RBP4.39□□□□□ -1.71
SCFD1-218ENST00000556256 C1orf43Q9BWL3 253 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 GLOD4Q9HC38 313 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 POT1Q9NUX5 634 aa4.39□□□□□ -1.71
SCFD1-218ENST00000556256 CCNL1Q9UK58 526 aaPredicted RBP4.39□□□□□ -1.71
SCFD1-218ENST00000556256 FZD9O00144 591 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 TJP3O95049 919 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 PIK3CGP48736 1102 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 ALDH5A1P51649 535 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-218ENST00000556256 DSC2Q02487 901 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 TAF7LQ5H9L4 462 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 CT47A1Q5JQC4 288 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-218ENST00000556256 SERPINA13PQ6UXR4 307 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 TTC7BQ86TV6 843 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 NOP9Q86U38 636 aaKnown RBP4.38□□□□□ -1.71
SCFD1-218ENST00000556256 EFHD1Q9BUP0 239 aa4.38□□□□□ -1.71
SCFD1-218ENST00000556256 H3BNX3 289 aa4.37□□□□□ -1.71
SCFD1-218ENST00000556256 A1BGP04217 495 aa4.37□□□□□ -1.71
SCFD1-218ENST00000556256 RPLP2P05387 115 aaKnown RBP4.37□□□□□ -1.71
SCFD1-218ENST00000556256 PSG1P11464 419 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms