RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SOWAHBA6NEL2 793 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 ACKR2O00590 384 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 EDF1O60869 148 aaKnown RBP14.17□□□□□ -0.14
SHMT2-222ENST00000555774 SPAG7O75391 227 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 LRCH4O75427 683 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 DCTN3O75935 186 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 IFNB1P01574 187 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 KDELR1P24390 212 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 RFC1P35251 1148 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-222ENST00000555774 CTCFP49711 727 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-222ENST00000555774 OTUD4Q01804 1114 aaKnown RBP14.17□□□□□ -0.14
SHMT2-222ENST00000555774 MOGSQ13724 837 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 PLPPR4Q7Z2D5 763 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 NAT8LQ8N9F0 302 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 RNF149Q8NC42 400 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 ACTL9Q8TC94 416 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 ALKBH8Q96BT7 664 aaKnown RBP14.17□□□□□ -0.14
SHMT2-222ENST00000555774 HAUS1Q96CS2 278 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 PAIP2Q9BPZ3 127 aaKnown RBP14.17□□□□□ -0.14
SHMT2-222ENST00000555774 DHRS4Q9BTZ2 278 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 BCO2Q9BYV7 579 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 GGT7Q9UJ14 662 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 WDR90Q96KV7 1748 aa14.17□□□□□ -0.14
SHMT2-222ENST00000555774 WFS1O76024 890 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 CA4P22748 312 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 CCND1P24385 295 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ALDH3A1P30838 453 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 GBP2P32456 591 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-222ENST00000555774 GPX6P59796 221 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ATF7IP2Q5U623 682 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 SCARA5Q6ZMJ2 495 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.16□□□□□ -0.144e-7■■□□□ 12.9
SHMT2-222ENST00000555774 PYROXD1Q8WU10 500 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 RSAD2Q8WXG1 361 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 CPT1BQ92523 772 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 FZD8Q9H461 694 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ACSS3Q9H6R3 686 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 EBF2Q9HAK2 575 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 RABGEF1Q9UJ41 708 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 CST8O60676 142 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 SRGAP2CP0DJJ0 459 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 PSMC1P62191 440 aaKnown RBP14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ADCY1Q08828 1119 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 MYO1EQ12965 1108 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ZNF667Q5HYK9 610 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 HHATQ5VTY9 493 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ADGRD1Q6QNK2 874 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 FAM47EQ6ZV65 393 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ZNF398Q8TD17 642 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 ACSF2Q96CM8 615 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-222ENST00000555774 PNMA3Q9UL41 463 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 CLUHO75153 1309 aa14.16□□□□□ -0.14
SHMT2-222ENST00000555774 GOLGA8SH3BPF8 625 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 APOC4-APOC2K7ER74 178 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 APOC2P02655 101 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 CD19P15391 556 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 MSH2P43246 934 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 GABRB2P47870 512 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 PDE4CQ08493 712 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 CBLBQ13191 982 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 DNAJC3Q13217 504 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 PARP6Q2NL67 630 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 WDR78Q5VTH9 848 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 XYLT1Q86Y38 959 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 ARFGAP1Q8N6T3 406 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 CMASQ8NFW8 434 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-222ENST00000555774 JOSD2Q8TAC2 188 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 ZWILCHQ9H900 591 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-222ENST00000555774 TM9SF1O15321 606 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 KRT16P08779 473 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 ATP2A2P16615 1042 aaKnown RBP14.15□□□□□ -0.14
SHMT2-222ENST00000555774 IL1R2P27930 398 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 RPA3P35244 121 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-222ENST00000555774 RPL22P35268 128 aaKnown RBP14.15□□□□□ -0.14
SHMT2-222ENST00000555774 SLC26A2P50443 739 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 PRAMEF18Q5VWM3 479 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 C4orf33Q8N1A6 199 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 ANKLE1Q8NAG6 615 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 INPP5DQ92835 1189 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 GPR20Q99678 358 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 LRMDAQ9H2I8 198 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 FAM124BQ9H5Z6 455 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-222ENST00000555774 RPF1Q9H9Y2 349 aaKnown RBP14.15□□□□□ -0.14
SHMT2-222ENST00000555774 CYP3A43Q9HB55 503 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 BTBD7Q9P203 1132 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 TNFSF13BQ9Y275 285 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 LRRC37A2A6NM11 1700 aa14.15□□□□□ -0.14
SHMT2-222ENST00000555774 ZBTB42B2RXF5 422 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 MCF2LO15068 1137 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 ATICP31939 592 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 PCK1P35558 622 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 RAD23BP54727 409 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 E2F5Q15329 346 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 PDIK1LQ8N165 341 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 AGGF1Q8N302 714 aaeCLIP14.14□□□□□ -0.15
SHMT2-222ENST00000555774 MCRS1Q96EZ8 462 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 L3MBTL3Q96JM7 780 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-222ENST00000555774 TMEM237Q96Q45 408 aa14.14□□□□□ -0.15
SHMT2-222ENST00000555774 LRRC37BQ96QE4 947 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms