RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 PCED1BQ96HM7 432 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 TRPV4Q9HBA0 871 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 ZFP14Q9HCL3 533 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.9■■□□□ 1.1
VTI1B-205ENST00000555543 ARHGEF3Q9NR81 526 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 CETN3O15182 167 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 FGF19O95750 216 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 ASS1P00966 412 aaKnown RBP21.89■■□□□ 1.09
VTI1B-205ENST00000555543 BDNFP23560 247 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 MAGEA11P43364 429 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 MCCD1P59942 119 aaPredicted RBP21.89■■□□□ 1.09
VTI1B-205ENST00000555543 UBE2HP62256 183 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 RPL10AP62906 217 aaKnown RBP21.89■■□□□ 1.09
VTI1B-205ENST00000555543 CYP27A1Q02318 531 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 ENPEPQ07075 957 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 TAF12Q16514 161 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 SGSM1Q2NKQ1 1148 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 ASTLQ6HA08 431 aaPredicted RBP21.89■■□□□ 1.09
VTI1B-205ENST00000555543 VITQ6UXI7 678 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 C4orf50Q6ZRC1 276 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 SCN4BQ8IWT1 228 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 PRSS33Q8NF86 280 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 MYCBPAPQ8TBZ2 947 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 TAS1R2Q8TE23 839 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 GPR88Q9GZN0 384 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 MMRN2Q9H8L6 949 aa21.89■■□□□ 1.09
VTI1B-205ENST00000555543 MAGEC2Q9UBF1 373 aaPredicted RBP21.89■■□□□ 1.09
VTI1B-205ENST00000555543 MAGED2Q9UNF1 606 aaPredicted RBP21.89■■□□□ 1.09
VTI1B-205ENST00000555543 ARIH1Q9Y4X5 557 aaPredicted RBP21.89■■□□□ 1.09
VTI1B-205ENST00000555543 OBSL1O75147 1896 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 A8MXQ7 604 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 LRRN2O75325 713 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 NOL4O94818 638 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 CSH1P0DML2 217 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 CSH2P0DML3 217 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 PTPN1P18031 435 aaKnown RBP21.88■■□□□ 1.09
VTI1B-205ENST00000555543 CDC25CP30307 473 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 MAPRE1Q15691 268 aaKnown RBP21.88■■□□□ 1.09
VTI1B-205ENST00000555543 GPR158Q5T848 1215 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 GPIHBP1Q8IV16 184 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 B3GALNT2Q8NCR0 500 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 TSG101Q99816 390 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 GTPBP4Q9BZE4 634 aaKnown RBP21.88■■□□□ 1.09
VTI1B-205ENST00000555543 TBC1D17Q9HA65 648 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 TMEM30AQ9NV96 361 aa21.88■■□□□ 1.09
VTI1B-205ENST00000555543 NUP210Q8TEM1 1887 aaPredicted RBP21.88■■□□□ 1.09
VTI1B-205ENST00000555543 SLC38A8A6NNN8 435 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 BIN1O00499 593 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 PI15O43692 258 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 TADA3O75528 432 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 PRAMEF12O95522 483 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 F11P03951 625 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 EPB41P11171 864 aaKnown RBP21.87■■□□□ 1.09
VTI1B-205ENST00000555543 ASPAP45381 313 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 CLCN5P51795 746 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 NLRP12P59046 1061 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 MORC3Q14149 939 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 ARID3BQ8IVW6 561 aaPredicted RBP21.87■■□□□ 1.09
VTI1B-205ENST00000555543 TAF4BQ92750 862 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 GCNAQ96QF7 691 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 APOBEC3GQ9HC16 384 aaKnown RBP21.87■■□□□ 1.09
VTI1B-205ENST00000555543 TMEM8AQ9HCN3 771 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 HMGXB4Q9UGU5 601 aa21.87■■□□□ 1.09
VTI1B-205ENST00000555543 COL4A2P08572 1712 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 HEPACAM2A8MVW5 462 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 SLC16A3O15427 465 aaKnown RBP21.86■■□□□ 1.09
VTI1B-205ENST00000555543 AOC1P19801 751 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 CCNE1P24864 410 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 CACNA2D1P54289 1103 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 NOP14P78316 857 aaKnown RBP21.86■■□□□ 1.09
VTI1B-205ENST00000555543 FKBP3Q00688 224 aaKnown RBP21.86■■□□□ 1.09
VTI1B-205ENST00000555543 LRRC63Q05C16 580 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 ARHGAP15Q53QZ3 475 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 VSTM1Q6UX27 236 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 TRMT2BQ96GJ1 504 aaKnown RBP21.86■■□□□ 1.09
VTI1B-205ENST00000555543 B3GNT5Q9BYG0 378 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 ZNF518BQ9C0D4 1074 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 KCNH6Q9H252 994 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 TASP1Q9H6P5 420 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 DENND4CQ5VZ89 1909 aa21.86■■□□□ 1.09
VTI1B-205ENST00000555543 PPP1R3GB7ZBB8 358 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 CLDN5O00501 218 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 PSMA7O14818 248 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 P4HA1P13674 534 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 PSMC3P17980 439 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 ORC1Q13415 861 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 STIM1Q13586 685 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 MLF2Q15773 248 aaPredicted RBP21.85■■□□□ 1.09
VTI1B-205ENST00000555543 SLC44A4Q53GD3 710 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 KLHL10Q6JEL2 608 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 SEMA4DQ92854 862 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 MYRFLQ96LU7 910 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 LRRC3BQ96PB8 259 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 TRMT61BQ9BVS5 477 aaKnown RBP21.85■■□□□ 1.09
VTI1B-205ENST00000555543 SLC46A2Q9BY10 475 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 BCO2Q9BYV7 579 aa21.85■■□□□ 1.09
VTI1B-205ENST00000555543 SMG9Q9H0W8 520 aaKnown RBP21.85■■□□□ 1.09
VTI1B-205ENST00000555543 GREB1Q4ZG55 1949 aa21.84■■□□□ 1.09
VTI1B-205ENST00000555543 F8VP50 259 aa21.84■■□□□ 1.09
VTI1B-205ENST00000555543 GTF2H1P32780 548 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms