RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 KBTBD4Q9NVX7 518 aa12.74□□□□□ -0.37
SRP54-203ENST00000553544 GREB1Q4ZG55 1949 aa12.74□□□□□ -0.37
SRP54-203ENST00000553544 SPAG17Q6Q759 2223 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 SCN1AP35498 2009 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 OTOL1A6NHN0 477 aaPredicted RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 DCLK1O15075 740 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 APBB3O95704 486 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 ODC1P11926 461 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 CSRP1P21291 193 aaKnown RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 ADSSP30520 456 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 CYP4F8P98187 520 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 PPP2R3AQ06190 1150 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 BFSP1Q12934 665 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 BECN1Q14457 450 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 SLC39A12Q504Y0 691 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 USP39Q53GS9 565 aaKnown RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 SPATA1Q5VX52 437 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 ADALQ6DHV7 355 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 CRELD2Q6UXH1 353 aaPredicted RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 SYT13Q7L8C5 426 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 C11orf74Q86VG3 221 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 TTC9BQ8N6N2 239 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 CCDC26Q8TAB7 109 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 SENP8Q96LD8 212 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 HHIPQ96QV1 700 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 SEPT5Q99719 369 aaPredicted RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 P2RY13Q9BPV8 354 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 LPIN3Q9BQK8 851 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 TNMDQ9H2S6 317 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 CUEDC2Q9H467 287 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 MRPL44Q9H9J2 332 aaKnown RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 IL21Q9HBE4 155 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 FBRSL1Q9HCM7 1045 aaKnown RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 TMEM9BQ9NQ34 198 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 HPS4Q9NQG7 708 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 TDP1Q9NUW8 608 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 POLR3BQ9NW08 1133 aaPredicted RBP12.73□□□□□ -0.37
SRP54-203ENST00000553544 WASF3Q9UPY6 502 aa12.73□□□□□ -0.37
SRP54-203ENST00000553544 IGF2RP11717 2491 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 SPEGQ15772 3267 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 SOBPA7XYQ1 873 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 HOXB3P14651 431 aaPredicted RBP12.72□□□□□ -0.37
SRP54-203ENST00000553544 IDEP14735 1019 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 SPINK2P20155 84 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 DDX6P26196 483 aaKnown RBP eCLIP12.72□□□□□ -0.37
SRP54-203ENST00000553544 GBP1P32455 592 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 ACOT2P49753 483 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 CASP5P51878 434 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 SMARCB1Q12824 385 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 POSTNQ15063 836 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 PDGFRLQ15198 375 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 L1TD1Q5T7N2 865 aaKnown RBP12.72□□□□□ -0.37
SRP54-203ENST00000553544 TRIM68Q6AZZ1 485 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 CNNM4Q6P4Q7 775 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 LRSAM1Q6UWE0 723 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 METTL23Q86XA0 190 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 THEM5Q8N1Q8 247 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 MAB21L3Q8N8X9 362 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 SPRYD3Q8NCJ5 442 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 GIPC2Q8TF65 315 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 C2orf15Q8WU43 125 aaKnown RBP12.72□□□□□ -0.37
SRP54-203ENST00000553544 USP13Q92995 863 aaPredicted RBP12.72□□□□□ -0.37
SRP54-203ENST00000553544 FGFBP2Q9BYJ0 223 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 ADAM33Q9BZ11 813 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 TRIM9Q9C026 710 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 ASB7Q9H672 318 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 PANK4Q9NVE7 773 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 TBC1D7Q9P0N9 293 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 RCOR1Q9UKL0 485 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 AGO2Q9UKV8 859 aaKnown RBP12.72□□□□□ -0.37
SRP54-203ENST00000553544 DSEQ9UL01 958 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 PCDHA7Q9UN72 937 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 DERAQ9Y315 318 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 PCDHB13Q9Y5F0 798 aa12.72□□□□□ -0.37
SRP54-203ENST00000553544 LNP1A1A4G5 178 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 SRRM3A6NNA2 597 aaPredicted RBP12.71□□□□□ -0.37
SRP54-203ENST00000553544 GCNT3O95395 438 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 GUCY2FP51841 1108 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 DGKEP52429 567 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 ALCAMQ13740 583 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 DMC1Q14565 340 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 FOXD4L6Q3SYB3 417 aaPredicted RBP12.71□□□□□ -0.37
SRP54-203ENST00000553544 JADE1Q6IE81 842 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 FOXD4L3Q6VB84 417 aaPredicted RBP12.71□□□□□ -0.37
SRP54-203ENST00000553544 IQUBQ8NA54 791 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 RPLP0P6Q8NHW5 317 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 ACDQ96AP0 544 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 CHFRQ96EP1 664 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 ACCSQ96QU6 501 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 SCNM1Q9BWG6 230 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 LRRC27Q9C0I9 530 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 ZCWPW1Q9H0M4 648 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 KIF9Q9HAQ2 790 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 CFAP45Q9UL16 551 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 EXOC7Q9UPT5 735 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 CCL26Q9Y258 94 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 ZDHHC9Q9Y397 364 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 C2CD2Q9Y426 696 aa12.71□□□□□ -0.37
SRP54-203ENST00000553544 DSPP15924 2871 aaKnown RBP12.71□□□□□ -0.38
SRP54-203ENST00000553544 ANO9A1A5B4 782 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms