RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MMRN2Q9H8L6 949 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 PACSIN2Q9UNF0 486 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 SIK3Q9Y2K2 1263 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 PCDHB7Q9Y5E2 793 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 MYH10P35580 1976 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 ADGRA3Q8IWK6 1321 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 BHMG1C9JSJ3 638 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 KCNK3O14649 394 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 EPHB6O15197 1021 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 DAPK3O43293 454 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 SNX3O60493 162 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TSPAN1O60635 241 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 LPXNO60711 386 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 MYBL1P10243 752 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 PYGBP11216 843 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 ATP6V1C1P21283 382 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 PHKA2P46019 1235 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 PDE6CP51160 858 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 ADAM9Q13443 819 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 BTG3Q14201 252 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 RPS6KA1Q15418 735 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 VWA3BQ502W6 1294 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TWF2Q6IBS0 349 aaKnown RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 ZNF598Q86UK7 904 aaKnown RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 ECHDC2Q86YB7 292 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 IFNLR1Q8IU57 520 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 GPIHBP1Q8IV16 184 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 KIAA0895Q8NCT3 520 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 GLIS3Q8NEA6 775 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 LPPQ93052 612 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 RAB3IPQ96QF0 476 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TGS1Q96RS0 853 aaKnown RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 PIDD1Q9HB75 910 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 C1orf112Q9NSG2 853 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 RNF19AQ9NV58 838 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 LRFN2Q9ULH4 789 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 USP15Q9Y4E8 981 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 NLRC5Q86WI3 1866 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 CCDC188H7C350 402 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 SUN1O94901 812 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 PDHA1P08559 390 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 STAG3L1P0CL83 205 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 IMPDH2P12268 514 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 FOSL2P15408 326 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 ARF4P18085 180 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 IGFBP4P22692 258 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TUBP50607 506 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 AFF1P51825 1210 aaKnown RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 ERVK-21P61565 698 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 POU5F1BQ06416 359 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 KLC1Q07866 573 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TFDP1Q14186 410 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 EPC2Q52LR7 807 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 UBXN11Q5T124 520 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 HHATQ5VTY9 493 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 ANKRD40Q6AI12 368 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 PDXDC1Q6P996 788 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TMEM154Q6P9G4 183 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 LRRC55Q6ZSA7 311 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 FIBCD1Q8N539 461 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 GDPD5Q8WTR4 605 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 PGM2Q96G03 612 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 SYT15Q9BQS2 421 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 EIF2AQ9BY44 585 aaKnown RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 NFKBIZQ9BYH8 718 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TRIM7Q9C029 511 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 VCXQ9H320 206 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 CHST12Q9NRB3 414 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 FAM114A2Q9NRY5 505 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 TMEM161AQ9NX61 479 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 GGT7Q9UJ14 662 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 STXBP5LQ9Y2K9 1186 aa8.1□□□□□ -1.11
LIMA1-216ENST00000552909 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 MRPL42Q9Y6G3 142 aaKnown RBP8.1□□□□□ -1.11
LIMA1-216ENST00000552909 MYH11P35749 1972 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 CCDC169A6NNP5 214 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 TBKBP1A7MCY6 615 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 PDLIM1O00151 329 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 PGRMC1O00264 195 aaKnown RBP8.09□□□□□ -1.11
LIMA1-216ENST00000552909 CEP104O60308 925 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 TBCAO75347 108 aaKnown RBP8.09□□□□□ -1.11
LIMA1-216ENST00000552909 FAM13AO94988 1023 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 OAS1P00973 400 aaKnown RBP8.09□□□□□ -1.11
LIMA1-216ENST00000552909 GNAZP19086 355 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 PPP1R2P41236 205 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 PEX3P56589 373 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 TSNAXIP1Q2TAA8 658 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 CLLU1OSQ5K130 101 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 FAM26FQ5R3K3 315 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 ASRGL1Q7L266 308 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 MYCT1Q8N699 235 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 ZNF513Q8N8E2 541 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-216ENST00000552909 ACTRT1Q8TDG2 376 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 BAP1Q92560 729 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 CASD1Q96PB1 797 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 FGFBP2Q9BYJ0 223 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 DDX47Q9H0S4 455 aaKnown RBP8.09□□□□□ -1.11
LIMA1-216ENST00000552909 ADAM7Q9H2U9 754 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 FZD8Q9H461 694 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 LRRC4CQ9HCJ2 640 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms