RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ATP1A2P50993 1020 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SIK1P57059 783 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 LACTBP83111 547 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 AMPD2Q01433 879 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SQLEQ14534 574 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 LPIN1Q14693 890 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 TRIM72Q6ZMU5 477 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 RUFY4Q6ZNE9 571 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 C1orf122Q6ZSJ8 110 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 PEX26Q7Z412 305 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 PLPP7Q8NBV4 271 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SLC47A1Q96FL8 570 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 TUBGCP5Q96RT8 1024 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 C12orf49Q9H741 205 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 REV1Q9UBZ9 1251 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SMG5Q9UPR3 1016 aaKnown RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 COL24A1Q17RW2 1714 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 OVOS2A0A0G2JMS6 1433 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SYNJ2BP-COX16A0A087WUM0 186 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 NUPL2O15504 423 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 CLOCKO15516 846 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 HOXC11O43248 304 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ZC3H11AO75152 810 aaKnown RBP eCLIP9.28□□□□□ -0.923e-6■■■■□ 19.8
VPS13D-212ENST00000543766 HNF4AP41235 474 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 STIM1Q13586 685 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 C6orf89Q6UWU4 347 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 STXBP4Q6ZWJ1 553 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 MICALL2Q8IY33 904 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 PIGSQ96S52 555 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SEC22CQ9BRL7 303 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 C9orf16Q9BUW7 83 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SLC13A1Q9BZW2 595 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 STN1Q9H668 368 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 EPS8L2Q9H6S3 715 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SLC39A1Q9NY26 324 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 HBS1LQ9Y450 684 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ACEP12821 1306 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 RGPD8O14715 1765 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SERTM1A2A2V5 107 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 OR5K4A6NMS3 321 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 TNPO2O14787 897 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 POLR2MP0CAP2 368 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 CKBP12277 381 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SELLP14151 372 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ADCY7P51828 1080 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 HPCAP84074 193 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 GCNT1Q02742 428 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 PPIL2Q13356 520 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 TBC1D9BQ66K14 1250 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ATL1Q8WXF7 558 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SYN2Q92777 582 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 HDAC11Q96DB2 347 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 OTUD5Q96G74 571 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 STMN4Q9H169 189 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 SMYD3Q9H7B4 428 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 MRPL44Q9H9J2 332 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 NRBP2Q9NSY0 501 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 STMN3Q9NZ72 180 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 AGO2Q9UKV8 859 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 PCDHGA10Q9Y5H3 936 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 TLR3O15455 904 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 PFKFB2O60825 505 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ASMTLO95671 621 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 CAPN3P20807 821 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ARHGAP4P98171 946 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ART3Q13508 389 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 CFAP221Q4G0U5 840 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 PLEKHM3Q6ZWE6 761 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 METTL16Q86W50 562 aaKnown RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 CCNJLQ8IV13 435 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 TC2NQ8N9U0 490 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ICA1LQ8NDH6 482 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 RIN2Q8WYP3 895 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-212ENST00000543766 TAMM41Q96BW9 452 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 TRAPPC9Q96Q05 1148 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 HAUS4Q9H6D7 363 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 ANAPC5Q9UJX4 755 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 AXIN2Q9Y2T1 843 aa9.28□□□□□ -0.92
VPS13D-212ENST00000543766 C1orf232A0A0U1RR37 186 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 STX16-NPEPL1H3BU86 382 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 DCLK1O15075 740 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 MGRN1O60291 552 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 ATP2A2P16615 1042 aaKnown RBP9.27□□□□□ -0.92
VPS13D-212ENST00000543766 TCP1P17987 556 aaKnown RBP9.27□□□□□ -0.92
VPS13D-212ENST00000543766 PMLP29590 882 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 ACSL1P33121 698 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 MSH2P43246 934 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 RNF4P78317 190 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 CALCOCO2Q13137 446 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 PDCLQ13371 301 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 TOB2Q14106 344 aaPredicted RBP9.27□□□□□ -0.92
VPS13D-212ENST00000543766 RCN2Q14257 317 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 AARDQ4LEZ3 155 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 CCDC58Q4VC31 144 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 Q5PR19 223 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 TLK2Q86UE8 772 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 ALLCQ8N6M5 410 aa9.27□□□□□ -0.92
VPS13D-212ENST00000543766 MINDY2Q8NBR6 621 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms