RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 RHOBTB1O94844 696 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 LDHAP00338 332 aaKnown RBP16.58■□□□□ 0.24
RTN3-211ENST00000542238 ITGB3P05106 788 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 CKMP06732 381 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 USP17L7P0C7H9 530 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 CYP2F1P24903 491 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 ADSSP30520 456 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 POLR2BP30876 1174 aaKnown RBP16.58■□□□□ 0.24
RTN3-211ENST00000542238 IFNAR2P48551 515 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 GRIN1Q05586 938 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 FAM160A1Q05DH4 1040 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 NR1H3Q13133 447 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 PSMD2Q13200 908 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 PLK5Q496M5 336 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 SDHAF4Q5VUM1 108 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 SYT13Q7L8C5 426 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 DYMQ7RTS9 669 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 BRAPQ7Z569 592 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 FSIP1Q8NA03 581 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 STKLD1Q8NE28 680 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 RPLP0P6Q8NHW5 317 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 CCDC26Q8TAB7 109 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 OSCP1Q8WVF1 389 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 CD101Q93033 1021 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 ACDQ96AP0 544 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 ACCSQ96QU6 501 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 FAM213AQ9BRX8 229 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 TMEM206Q9H813 350 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 FBRSL1Q9HCM7 1045 aaKnown RBP16.58■□□□□ 0.24
RTN3-211ENST00000542238 RXFP3Q9NSD7 469 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 SEL1LQ9UBV2 794 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 CCDC39Q9UFE4 941 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 MYO16Q9Y6X6 1858 aa16.58■□□□□ 0.24
RTN3-211ENST00000542238 ANAPC1Q9H1A4 1944 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 NOL4O94818 638 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 APBB3O95704 486 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 PMLP29590 882 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 SF3A1Q15459 793 aaKnown RBP16.57■□□□□ 0.24
RTN3-211ENST00000542238 INTS6LQ5JSJ4 861 aaKnown RBP16.57■□□□□ 0.24
RTN3-211ENST00000542238 RNF43Q68DV7 783 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 SPATA2LQ8IUW3 424 aaPredicted RBP16.57■□□□□ 0.24
RTN3-211ENST00000542238 CSGALNACT2Q8N6G5 542 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 LRRC52Q8N7C0 313 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 RIN3Q8TB24 985 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 MYRFLQ96LU7 910 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 CYP2S1Q96SQ9 504 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 IKZF4Q9H2S9 585 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 SMOC1Q9H4F8 434 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 STK17AQ9UEE5 414 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 GTF3C4Q9UKN8 822 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 L1RE1Q9UN81 338 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 R3HCC1Q9Y3T6 440 aaKnown RBP16.57■□□□□ 0.24
RTN3-211ENST00000542238 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.57■□□□□ 0.24
RTN3-211ENST00000542238 CEP295Q9C0D2 2601 aa16.57■□□□□ 0.24
RTN3-211ENST00000542238 KIAA1549LQ6ZVL6 1849 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 PPP1R37O75864 691 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 KRT19P08727 400 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 GAP43P17677 238 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 ACAT1P24752 427 aaKnown RBP16.56■□□□□ 0.24
RTN3-211ENST00000542238 PCSK1P29120 753 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 LHX1P48742 406 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 CREB5Q02930 508 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 DMC1Q14565 340 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 BRSK2Q8IWQ3 736 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 SCN4BQ8IWT1 228 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 SYCP3Q8IZU3 236 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 C1orf127Q8N9H9 656 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 SPATA18Q8TC71 538 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 SAAL1Q96ER3 474 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 LSM14BQ9BX40 385 aaKnown RBP16.56■□□□□ 0.24
RTN3-211ENST00000542238 DUSP15Q9H1R2 295 aaPredicted RBP16.56■□□□□ 0.24
RTN3-211ENST00000542238 POLR3BQ9NW08 1133 aaPredicted RBP16.56■□□□□ 0.24
RTN3-211ENST00000542238 RBAKQ9NYW8 714 aaPredicted RBP16.56■□□□□ 0.24
RTN3-211ENST00000542238 EBF1Q9UH73 591 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 ITGA11Q9UKX5 1188 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 PCDHB13Q9Y5F0 798 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 SNX9Q9Y5X1 595 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 NUP205Q92621 2012 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 CHD6Q8TD26 2715 aa16.56■□□□□ 0.24
RTN3-211ENST00000542238 HELZP42694 1942 aaKnown RBP16.56■□□□□ 0.24
RTN3-211ENST00000542238 TADA3O75528 432 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 KCNK5O95279 499 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 GCNT3O95395 438 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 GARTP22102 1010 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 GBP1P32455 592 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 PDE6CP51160 858 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 RBP5P82980 135 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 SHC2P98077 582 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 KCNB1Q14721 858 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 ZNF77Q15935 545 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 C8orf34Q49A92 452 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 CFAP221Q4G0U5 840 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 L1TD1Q5T7N2 865 aaKnown RBP16.55■□□□□ 0.24
RTN3-211ENST00000542238 NAIF1Q69YI7 327 aaPredicted RBP16.55■□□□□ 0.24
RTN3-211ENST00000542238 SV2BQ7L1I2 683 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 ADGRF2Q8IZF7 708 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 TOP6BLQ8N6T0 577 aa16.55■□□□□ 0.24
RTN3-211ENST00000542238 NOC3LQ8WTT2 800 aaKnown RBP16.55■□□□□ 0.24
RTN3-211ENST00000542238 FUBP3Q96I24 572 aaKnown RBP eCLIP16.55■□□□□ 0.24
RTN3-211ENST00000542238 EPSTI1Q96J88 318 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms