RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 C2orf78A6NCI8 922 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 TM4SF5O14894 197 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 ATP2C2O75185 946 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 NOL4O94818 638 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 EPN2O95208 641 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 IL18RAPO95256 599 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 ZXDBP98169 803 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 BFSP1Q12934 665 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 USP4Q13107 963 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 INTS6LQ5JSJ4 861 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 L1TD1Q5T7N2 865 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 KRI1Q8N9T8 703 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 LEO1Q8WVC0 666 aaPredicted RBP16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 ZNF560Q96MR9 790 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 MTMR12Q9C0I1 747 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 MRPL44Q9H9J2 332 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 TRPC7Q9HCX4 862 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 THG1LQ9NWX6 298 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 CHD6Q8TD26 2715 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 TSPY1Q01534 308 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 GRSF1Q12849 480 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 MTF1Q14872 753 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 AASDHQ4L235 1098 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 PLA2G2CQ5R387 149 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 BRAPQ7Z569 592 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 RPLP0P6Q8NHW5 317 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 HPS3Q969F9 1004 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 HVCN1Q96D96 273 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 PCIF1Q9H4Z3 704 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 PDE11AQ9HCR9 933 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 RBAKQ9NYW8 714 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 GCNT4Q9P109 453 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 NME7Q9Y5B8 376 aa16.62■□□□□ 0.25
CLSTN3-213ENST00000541953 VPS37CA5D8V6 355 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 GCNT3O95395 438 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 BMP15O95972 392 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 CSH1P0DML2 217 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 CSH2P0DML3 217 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 DDX6P26196 483 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 USP46P62068 366 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 PSMC1P62191 440 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 POU5F1Q01860 360 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 SMARCB1Q12824 385 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 SOWAHAQ2M3V2 549 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 GAB4Q2WGN9 574 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 PLK5Q496M5 336 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 SFTPA1Q8IWL2 248 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 ARL14EPQ8N8R7 260 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 OR5B17Q8NGF7 314 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 NOC3LQ8WTT2 800 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 KBTBD7Q8WVZ9 684 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 MRPS31Q92665 395 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 ACBD6Q9BR61 282 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 LINC00597Q9H2U6 94 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 ECT2Q9H8V3 914 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 KIF9Q9HAQ2 790 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 SLC8A2Q9UPR5 921 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 SNX9Q9Y5X1 595 aa16.61■□□□□ 0.25
CLSTN3-213ENST00000541953 FRMD3A2A2Y4 597 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 GABRDO14764 452 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 PRPF6O94906 941 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 ZNF806P0C7X5 589 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 CCDC192P0DO97 292 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 LMO2P25791 158 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 CEBPZQ03701 1054 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 MESP2Q0VG99 397 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 RESTQ13127 1097 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 ZNF268Q14587 947 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 NFE2Q16621 373 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 EML3Q32P44 896 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 N4BP2L1Q5TBK1 243 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 CACNA2D4Q7Z3S7 1137 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 NT5DC4Q86YG4 428 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 ADGRF2Q8IZF7 708 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 CSGALNACT2Q8N6G5 542 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 OSCP1Q8WVF1 389 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 TRMT2BQ96GJ1 504 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 MYRFLQ96LU7 910 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 ACCSQ96QU6 501 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 P2RY13Q9BPV8 354 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 PANK2Q9BZ23 570 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 DUSP15Q9H1R2 295 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 CRTAC1Q9NQ79 661 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 GDAP2Q9NXN4 497 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 STK17AQ9UEE5 414 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 INVSQ9Y283 1065 aa16.6■□□□□ 0.25
CLSTN3-213ENST00000541953 CCDC163A0A0D9SF12 145 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 SCAMP3O14828 347 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 HUS1O60921 280 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 CKMP06732 381 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 KRT19P08727 400 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 ABCD1P33897 745 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 HOXD13P35453 343 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 MPLP40238 635 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 PNPLA4P41247 253 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 LIMK1P53667 647 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 FAM160A1Q05DH4 1040 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 POSTNQ15063 836 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 PDGFRLQ15198 375 aa16.59■□□□□ 0.25
CLSTN3-213ENST00000541953 ST3GAL2Q16842 350 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms